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UniProtKB/Swiss-Prot entry Q96B86


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name RGMA_HUMAN
Primary accession number Q96B86
Secondary accession numbers Q0JV97 Q8NC80 Q9H0E6 Q9NPM3
Integrated into Swiss-Prot on August 16, 2004
Sequence was last modified on August 16, 2004 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 41)
Name and origin of the protein
Protein name Repulsive guidance molecule A [Precursor]
Synonym RGM domain family member A
Gene name
Name: RGMA
Synonyms: RGM
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Testis;
DOI=10.1101/gr.GR1547R; PubMed=11230166 [NCBI, ExPASy, EBI, Israel, Japan]
Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B., Tampe J., Heubner D., Wambutt R., Korn B., Klein M., Poustka A.;
"Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.";
Genome Res. 11:422-435(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
The German cDNA consortium;
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1) AND PARTIAL NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Teratocarcinoma;
DOI=10.1038/ng1285; PubMed=14702039 [NCBI, ExPASy, EBI, Israel, Japan]
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human cDNAs.";
Nat. Genet. 36:40-45(2004).
[4]
PARTIAL NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Retina;
The European IMAGE consortium;
Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases.
[5]
PARTIAL NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Uterus;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AL136826; CAB66760.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AM392685; CAL37563.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK074910; BAC11285.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK074966; BAC11321.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK074980; BAC11330.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL390083; CAB98207.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC015886; AAH15886.2; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_064596.1; -.
UniGene Hs.271277
3D structure databases
ModBase Q96B86.
Organism-specific databases
HGNC HGNC:30308; RGMA.
GenAtlas RGMA.
HPA CAB012343; -.
MIM 607362; gene. [NCBI / EBI]
PharmGKB PA128394693; -.
GeneCards Q96B86.
Gene expression databases
ArrayExpress Q96B86; -.
CleanEx HS_RGMA; -.
GermOnline ENSG00000182175; Homo sapiens.
Ontologies
GO
GO:0005886; Cellular component: plasma membrane (inferred from electronic annotation from UniProtKB-SubCell).
QuickGo view.
Family and domain databases
InterPro IPR009496; RGM_C.
IPR010536; RGM_N.
Graphical view of domain structure.
Pfam PF06534; RGM_C; 1.
PF06535; RGM_N; 1.
Pfam graphical view of domain structure.
BLOCKS Q96B86.
Genome annotation databases
Ensembl ENSG00000182175; Homo sapiens. [Contig view]
GeneID 56963; -.
KEGG hsa:56963; -.
Phylogenomic databases
HOGENOM Q96B86; -.
HOVERGEN Q96B86; -.
Other
SOURCE RGMA; Homo sapiens.
ProtoNet Q96B86.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Cell membrane; Glycoprotein; GPI-anchor; Lipoprotein; Membrane; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    47  47     Potential. 
PROPEP   48   168  121     Removed in mature form (By similarity). PRO_0000030385
CHAIN   169   424  256     Repulsive guidance molecule A. PRO_0000030386
PROPEP   425   450  26     Removed in mature form (Potential). PRO_0000030387
LIPID   424   424        GPI-anchor amidated alanine (Potential). 
CARBOHYD   114   114        N-linked (GlcNAc...) (Potential). 
CARBOHYD   159   159        N-linked (GlcNAc...) (Potential). 
CARBOHYD   389   389        N-linked (GlcNAc...) (Potential). 
VAR_SEQ   1     4        MQPP -> ARGRGGRSLPARCSRRRSEAALSSQRDLFSSPFFLNSSS (in isoform 2). VSP_022294
CONFLICT   199   199        V -> A (in Ref. 3; BAC11285). 
Sequence information
Length: 450 AA [This is the length of the unprocessed precursor] Molecular weight: 49361 Da [This is the MW of the unprocessed precursor] CRC64: E3244FA591182DCF [This is a checksum on the sequence]
        10         20         30         40         50         60 
MQPPRERLVV TGRAGWMGMG RGAGRSALGF WPTLAFLLCS FPAATSPCKI LKCNSEFWSA 

        70         80         90        100        110        120 
TSGSHAPASD DTPEFCAALR SYALCTRRTA RTCRGDLAYH SAVHGIEDLM SQHNCSKDGP 

       130        140        150        160        170        180 
TSQPRLRTLP PAGDSQERSD SPEICHYEKS FHKHSATPNY THCGLFGDPH LRTFTDRFQT 

       190        200        210        220        230        240 
CKVQGAWPLI DNNYLNVQVT NTPVLPGSAA TATSKLTIIF KNFQECVDQK VYQAEMDELP 

       250        260        270        280        290        300 
AAFVDGSKNG GDKHGANSLK ITEKVSGQHV EIQAKYIGTT IVVRQVGRYL TFAVRMPEEV 

       310        320        330        340        350        360 
VNAVEDWDSQ GLYLCLRGCP LNQQIDFQAF HTNAEGTGAR RLAAASPAPT APETFPYETA 

       370        380        390        400        410        420 
VAKCKEKLPV EDLYYQACVF DLLTTGDVNF TLAAYYALED VKMLHSNKDK LHLYERTRDL 

       430        440        450 
PGRAAAGLPL APRPLLGALV PLLALLPVFC 

Q96B86 in FASTA format

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