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UniProtKB/Swiss-Prot entry Q8Y3B0


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DEF1_RALSO
Primary accession number Q8Y3B0
Secondary accession numbers None
Integrated into Swiss-Prot on September 19, 2002
Sequence was last modified on March 1, 2002 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 37)
Name and origin of the protein
Protein name Peptide deformylase 1
Synonyms PDF 1
EC 3.5.1.88
Polypeptide deformylase 1
Gene name
Name: def1
OrderedLocusNames: RSc0070
ORFNames: RS02248
From
Ralstonia solanacearum (Pseudomonas solanacearum) [TaxID: 305] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=GMI1000;
DOI=10.1038/415497a; PubMed=11823852 [NCBI, ExPASy, EBI, Israel, Japan]
Salanoubat M., Genin S., Artiguenave F., Gouzy J., Mangenot S., Arlat M., Billault A., Brottier P., Camus J.-C., Cattolico L., Chandler M., Choisne N., Claudel-Renard C., Cunnac S., Demange N., Gaspin C., Lavie M., Moisan A., Robert C., Saurin W., Schiex T., Siguier P., Thebault P., Whalen M., Wincker P., Levy M., Weissenbach J., Boucher C.A.;
"Genome sequence of the plant pathogen Ralstonia solanacearum.";
Nature 415:497-502(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AL646052; CAD13598.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_518191.1; -.
3D structure databases
HSSP Q9I7A8; 1N5N. [HSSP ENTRY / PDB]
ModBase Q8Y3B0.
Enzyme and pathway databases
BioCyc RSOL267608:RSC0070-MON; -.
Ontologies
GO
GO:0042586; Molecular function: peptide deformylase activity (inferred from electronic annotation from HAMAP).
GO:0006412; Biological process: translation (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00163; -; 1.
PBIL [Tree]
InterPro IPR000181; Fmet_deformylase.
Graphical view of domain structure.
Gene3D G3DSA:3.90.45.10; Fmet_deformylase; 1.
PANTHER PTHR10458; Fmet_deformylase; 1.
Pfam PF01327; Pep_deformylase; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF004749; Pep_def; 1.
PRINTS PR01576; PDEFORMYLASE.
ProDom PD003844; Fmet_deformylase; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR00079; pept_deformyl; 1.
BLOCKS Q8Y3B0.
ProtoNet Q8Y3B0.
Genome annotation databases
GeneID 1218872; -.
GenomeReviews AL646052_GR; RSc0070.
KEGG rso:RSc0070; -.
NMPDR fig|267608.1.peg.70; -.
Phylogenomic databases
HOGENOM Q8Y3B0; -.
Genome annotation databases
CMR Q8Y3B0; RSc0070.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Hydrolase; Iron; Metal-binding; Protein biosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   169  169     Peptide deformylase 1. PRO_0000082824
ACT_SITE   135   135        By similarity. 
METAL   92    92        Iron (By similarity). 
METAL   134   134        Iron (By similarity). 
METAL   138   138        Iron (By similarity). 
Sequence information
Length: 169 AA [This is the length of the unprocessed precursor] Molecular weight: 19425 Da [This is the MW of the unprocessed precursor] CRC64: A72DFF47E1015E29 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MALLNILQYP DPRLHKVAKP VAVVDDRIRK LVADMAETMY DAPGIGLAAT QVDVHERVIT 

        70         80         90        100        110        120 
IDVSESRDEL RVFINPEIVW ASEARKVWDE GCLSVPDIYD KVERPDRVRV RALNEKGESF 

       130        140        150        160 
ELETDGLLAV CIQHEMDHLM GKVFVEYLSP LKQNRIKIKL KKHQLERAR 

Q8Y3B0 in FASTA format

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BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

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