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UniProtKB/Swiss-Prot entry Q72C59


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GCSPA_DESVH
Primary accession number Q72C59
Secondary accession numbers None
Integrated into Swiss-Prot on January 15, 2008
Sequence was last modified on July 5, 2004 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 33)
Name and origin of the protein
Protein name Probable glycine dehydrogenase [decarboxylating] subunit 1
Synonyms EC 1.4.4.2
Glycine decarboxylase subunit 1
Glycine cleavage system P-protein subunit 1
Gene name
Name: gcvPA
OrderedLocusNames: DVU_1425
From
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) [TaxID: 882] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nbt959; PubMed=15077118 [NCBI, ExPASy, EBI, Israel, Japan]
Heidelberg J.F., Seshadri R., Haveman S.A., Hemme C.L., Paulsen I.T., Kolonay J.F., Eisen J.A., Ward N.L., Methe B.A., Brinkac L.M., Daugherty S.C., DeBoy R.T., Dodson R.J., Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Fouts D.E., Haft D.H., Selengut J., Peterson J.D., Davidsen T.M., Zafar N., Zhou L., Radune D., Dimitrov G., Hance M., Tran K., Khouri H.M., Gill J., Utterback T.R., Feldblyum T.V., Wall J.D., Voordouw G., Fraser C.M.;
"The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.";
Nat. Biotechnol. 22:554-559(2004).
Comments
  • FUNCTION: The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (By similarity).
  • CATALYTIC ACTIVITY: Glycine + H-protein-lipoyllysine = H-protein-S-aminomethyldihydrolipoyllysine + CO2.
  • SUBUNIT: The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is an heterodimer of two subunits (By similarity).
  • SIMILARITY: Belongs to the gcvP family. N-terminal subunit subfamily.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE017285; AAS95903.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_010644.1; -.
3D structure databases
ModBase Q72C59.
Enzyme and pathway databases
BioCyc DVUL882:DVU_1425-MON; -.
Ontologies
GO
GO:0004375; Molecular function: glycine dehydrogenase (decarboxylating) activity (inferred from electronic annotation from InterPro).
GO:0030170; Molecular function: pyridoxal phosphate binding (inferred from electronic annotation from InterPro).
GO:0019464; Biological process: glycine decarboxylation via glycine cleavage system (inferred from electronic annotation from HAMAP).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
HAMAP MF_00712; -; 1.
PBIL [Tree]
InterPro IPR003437; GDC-P.
IPR015421; PyrdxlP-dep_Trfase_major_sub1.
Graphical view of domain structure.
Gene3D G3DSA:3.40.640.10; PyrdxlP-dep_Trfase_major_sub1; 1.
PANTHER PTHR11773; GDC-P; 1.
Pfam PF02347; GDC-P; 1.
Pfam graphical view of domain structure.
ProtoNet Q72C59.
Genome annotation databases
GeneID 2794686; -.
GenomeReviews AE017285_GR; DVU_1425.
KEGG dvu:DVU1425; -.
NMPDR fig|882.1.peg.1419; -.
TIGR DVU_1425; -.
Phylogenomic databases
HOGENOM Q72C59; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Oxidoreductase.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   443  443     Probable glycine dehydrogenase [decarboxylating] subunit 1. PRO_1000045646
Sequence information
Length: 443 AA [This is the length of the unprocessed precursor] Molecular weight: 48152 Da [This is the MW of the unprocessed precursor] CRC64: A709219D63099AE6 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MPFVPHSPED VSVMLDAIGV NTIEDLFADI PAEMRPKSFA LPKGLSEMDV CSRLEALSAR 

        70         80         90        100        110        120 
NRTDVVSFLG AGFYDHHIPK AVDALSSRGE FYTAYTPYQP EAAQGTLQAI FEFQTAVCRL 

       130        140        150        160        170        180 
LDMDCANASV YDGGSALFEA MMMAVRATRR RKLVIDEALS PIYRTMLASY TSNLQLELVT 

       190        200        210        220        230        240 
VPHRDGLSDM DALKASVDDT CAAVVVQNPN FFGAITDFTD LFTHARAHKA LGVISVYPVM 

       250        260        270        280        290        300 
QSVLKTPGEM GADIAVADGQ SIGQPLSFGG PYLGIMTCTK PLVRQIPGRI VGRTQDVDGR 

       310        320        330        340        350        360 
TGYVLTLQAR EQHIRRAKAT SNICSNQALC ALRSLIHLTL LGPEGLVRTA ELSMERARYA 

       370        380        390        400        410        420 
AERLTALPGV ELLHDAPFGN EFAVRLPVSA FEVVDRLTAR GYVPGFPVGR YYPGMDNVLL 

       430        440 
VACTEKHSFE QVGILAEMLG GIL 

Q72C59 in FASTA format

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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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