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UniProtKB/Swiss-Prot entry Q56YT0


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LAC3_ARATH
Primary accession number Q56YT0
Secondary accession number O22917
Integrated into Swiss-Prot on April 3, 2007
Sequence was last modified on April 3, 2007 (Sequence version 2)
Annotations were last modified on    November 4, 2008 (Entry version 31)
Name and origin of the protein
Protein name Laccase-3 [Precursor]
Synonyms EC 1.10.3.2
Benzenediol:oxygen oxidoreductase 3
Urishiol oxidase 3
Diphenol oxidase 3
Gene name
Name: LAC3
OrderedLocusNames: At2g30210
ORFNames: T9D9.2
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/45471; PubMed=10617197 [NCBI, ExPASy, EBI, Israel, Japan]
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
Nature 402:761-768(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 391-570.
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
[3]
TISSUE SPECIFICITY.
DOI=10.1007/s00425-004-1472-6; PubMed=15940465 [NCBI, ExPASy, EBI, Israel, Japan]
McCaig B.C., Meagher R.B., Dean J.F.D.;
"Gene structure and molecular analysis of the laccase-like multicopper oxidase (LMCO) gene family in Arabidopsis thaliana.";
Planta 221:619-636(2005).
[4]
TISSUE SPECIFICITY.
DOI=10.1093/jxb/erl022; PubMed=16804053 [NCBI, ExPASy, EBI, Israel, Japan]
Cai X., Davis E.J., Ballif J., Liang M., Bushman E., Haroldsen V., Torabinejad J., Wu Y.;
"Mutant identification and characterization of the laccase gene family in Arabidopsis.";
J. Exp. Bot. 57:2563-2569(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AC002338; AAC16927.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC004165; AAM14916.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK221241; BAD93858.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T00579; T00579.
RefSeq NP_180580.1; -.
UniGene At.27864
3D structure databases
HSSP Q96UT7; 1KYA. [HSSP ENTRY / PDB]
ModBase Q56YT0.
Organism-specific databases
TAIR At2g30210; -.
Ontologies
GO
GO:0048046; Cellular component: apoplast (inferred from electronic annotation from UniProtKB-KW).
GO:0008471; Molecular function: laccase activity (inferred from electronic annotation from EC).
GO:0046274; Biological process: lignin catabolic process (inferred from electronic annotation from UniProtKB-KW).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR001117; Cu-oxidase.
IPR011706; Cu-oxidase_2.
IPR011707; Cu-oxidase_3.
IPR002355; Cu_oxidase_Cu_BS.
IPR008972; Cupredoxin.
IPR017761; Laccase.
Graphical view of domain structure.
Gene3D G3DSA:2.60.40.420; Cupredoxin; 3.
Pfam PF00394; Cu-oxidase; 1.
PF07731; Cu-oxidase_2; 1.
PF07732; Cu-oxidase_3; 1.
Pfam graphical view of domain structure.
PROSITE PS00079; MULTICOPPER_OXIDASE1; 1.
PS00080; MULTICOPPER_OXIDASE2; 1.
BLOCKS Q56YT0.
ProtoNet Q56YT0.
Genome annotation databases
GeneID 817571; -.
GenomeReviews CT485783_GR; AT2G30210.
KEGG ath:AT2G30210; -.
NMPDR fig|3702.1.peg.10073; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Apoplast; Complete proteome; Copper; Glycoprotein; Lignin degradation; Metal-binding; Oxidoreductase; Repeat; Secreted; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    25  25     Potential. 
CHAIN   26   570  545     Laccase-3. PRO_0000283631
DOMAIN   33   149  117     Plastocyanin-like 1. 
DOMAIN   159   310  152     Plastocyanin-like 2. 
DOMAIN   419   554  136     Plastocyanin-like 3. 
METAL   83    83        Copper 1; type 2 (By similarity). 
METAL   85    85        Copper 2; type 3 (By similarity). 
METAL   128   128        Copper 2; type 3 (By similarity). 
METAL   130   130        Copper 3; type 3 (By similarity). 
METAL   471   471        Copper 4; type 1 (By similarity). 
METAL   474   474        Copper 1; type 2 (By similarity). 
METAL   476   476        Copper 3; type 3 (By similarity). 
METAL   533   533        Copper 3; type 3 (By similarity). 
METAL   534   534        Copper 4; type 1 (By similarity). 
METAL   535   535        Copper 2; type 3 (By similarity). 
METAL   539   539        Copper 4; type 1 (By similarity). 
CARBOHYD   79    79        N-linked (GlcNAc...) (Potential). 
CARBOHYD   188   188        N-linked (GlcNAc...) (Potential). 
CARBOHYD   298   298        N-linked (GlcNAc...) (Potential). 
CARBOHYD   332   332        N-linked (GlcNAc...) (Potential). 
CARBOHYD   383   383        N-linked (GlcNAc...) (Potential). 
CARBOHYD   393   393        N-linked (GlcNAc...) (Potential). 
CARBOHYD   433   433        N-linked (GlcNAc...) (Potential). 
Sequence information
Length: 570 AA [This is the length of the unprocessed precursor] Molecular weight: 64027 Da [This is the MW of the unprocessed precursor] CRC64: 48520C684D7B2DA3 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MESFRRFSLL SFIALLAYFA FLASAEHHVH QFVITPTPVK RLCRTHQSIT VNGQYPGPTL 

        70         80         90        100        110        120 
VVRNGDSLAI TVINRARYNI SIHWHGIRQL RNPWADGPEY ITQCPIRPGQ TYTYRFKIED 

       130        140        150        160        170        180 
QEGTLWWHAH SRWLRATVYG ALIIYPRLGS PYPFSMPKRD IPILLGEWWD RNPMDVLKQA 

       190        200        210        220        230        240 
QFTGAAANVS DAYTINGQPG DLYRCSRAGT IRFPIFPGET VQLRVINAGM NQELFFSVAN 

       250        260        270        280        290        300 
HQFTVVETDS AYTKPFTTNV IMIGPGQTTN VLLTANQRPG RYYMAARAYN SANAPFDNTT 

       310        320        330        340        350        360 
TTAILQYVNA PTRRGRGRGQ IAPVFPVLPG FNDTATATAF TNRLRYWKRA PVPQQVDENL 

       370        380        390        400        410        420 
FFTVGLGLIN CANPNSPRCQ GPNGTRFAAS MNNMSFVLPR SNSVMQAYYQ GTPGIFTTDF 

       430        440        450        460        470        480 
PPVPPVQFDY TGNVSRGLWQ PIKGTKAYKL KYKSNVQIVL QDTSIVTPEN HPMHLHGYQF 

       490        500        510        520        530        540 
YVVGSGFGNF NPRTDPARFN LFDPPERNTI GTPPGGWVAI RFVADNPGAW FMHCHIDSHL 

       550        560        570 
GWGLAMVFLV ENGRGQLQSV QAPPLDLPRC 

Q56YT0 in FASTA format

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