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UniProtKB/Swiss-Prot entry P60520


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GBRL2_HUMAN
Primary accession number P60520
Secondary accession numbers O08765 Q9DCP8 Q9UQF7
Integrated into Swiss-Prot on March 1, 2004
Sequence was last modified on March 1, 2004 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 42)
Name and origin of the protein
Protein name Gamma-aminobutyric acid receptor-associated protein-like 2
Synonyms GABA(A) receptor-associated protein-like 2
Golgi-associated ATPase enhancer of 16 kDa
GATE-16
General protein transport factor p16
Ganglioside expression factor 2
GEF-2
MAP1 light chain 3-related protein
Gene name
Name: GABARAPL2
Synonyms: FLC3A, GEF2
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND INTERACTION WITH ULK1.
TISSUE=Frontal cortex;
DOI=10.1016/S0169-328X(00)00218-7; PubMed=11146101 [NCBI, ExPASy, EBI, Israel, Japan]
Okazaki N., Yan J., Yuasa S., Ueno T., Kominami E., Masuho Y., Koga H., Muramatsu M.-A.;
"Interaction of the Unc-51-like kinase and microtubule-associated protein light chain 3 related proteins in the brain: possible role of vesicular transport in axonal elongation.";
Brain Res. Mol. Brain Res. 85:1-12(2000).
[2]
NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
DOI=10.1006/geno.2001.6555; PubMed=11414770 [NCBI, ExPASy, EBI, Israel, Japan]
Xin Y., Yu L., Chen Z., Zheng L., Fu Q., Jiang J., Zhang P., Gong R., Zhao S.;
"Cloning, expression patterns, and chromosome localization of three human and two mouse homologues of GABA(A) receptor-associated protein.";
Genomics 74:408-413(2001).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
Storch S., Braulke T.;
Submitted (AUG-1998) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Pituitary;
Song H., Peng Y., Yu Y., Fu G., Mao M., Zhang Q., Zhu H., Li G., Luo M., Chen J., Hu R.;
"Human GEF2 homolog gene.";
Submitted (JUL-1998) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain, and Testis;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-10, AND MASS SPECTROMETRY.
DOI=10.1073/pnas.0611217104; PubMed=17287340 [NCBI, ExPASy, EBI, Israel, Japan]
Molina H., Horn D.M., Tang N., Mathivanan S., Pandey A.;
"Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.";
Proc. Natl. Acad. Sci. U.S.A. 104:2199-2204(2007).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-39, AND MASS SPECTROMETRY.
DOI=10.1126/science.1140321; PubMed=17525332 [NCBI, ExPASy, EBI, Israel, Japan]
Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J.;
"ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.";
Science 316:1160-1166(2007).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AB030710; BAB21548.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF087848; AAK20400.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AJ010569; CAA09249.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF077046; AAD27779.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC005985; AAH05985.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC014594; AAH14594.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC029601; AAH29601.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_009216.1; -.
UniGene Hs.461379
3D structure databases
SMR P60520; 1-117.
ModBase P60520.
Protein-protein interaction databases
IntAct P60520; -.
PTM databases
PhosphoSite P60520; -.
Organism-specific databases
H-InvDB HIX0013248; -.
HGNC HGNC:13291; GABARAPL2.
GeneLynx GABARAPL2; Homo sapiens.
GenAtlas GABARAPL2.
MIM 607452; gene. [NCBI / EBI]
PharmGKB PA28482; -.
GeneCards P60520.
Gene expression databases
ArrayExpress P60520; -.
CleanEx HS_GABARAPL2; -.
GermOnline ENSG00000034713; Homo sapiens.
Ontologies
GO
GO:0000421; Cellular component: autophagic vacuole membrane (inferred from direct assay from UniProtKB).
GO:0005829; Cellular component: cytosol (inferred from sequence or structural similarity from UniProtKB).
GO:0000139; Cellular component: Golgi membrane (inferred from sequence or structural similarity from UniProtKB).
GO:0005624; Cellular component: membrane fraction (inferred from direct assay from UniProtKB).
GO:0051117; Molecular function: ATPase binding (inferred from sequence or structural similarity from UniProtKB).
GO:0048487; Molecular function: beta-tubulin binding (inferred from sequence or structural similarity from UniProtKB).
GO:0050811; Molecular function: GABA receptor binding (non-traceable author statement from UniProtKB).
GO:0008017; Molecular function: microtubule binding (non-traceable author statement from UniProtKB).
GO:0000149; Molecular function: SNARE binding (inferred from sequence or structural similarity from UniProtKB).
GO:0006914; Biological process: autophagy (non-traceable author statement from UniProtKB).
GO:0006891; Biological process: intra-Golgi vesicle-mediated transport (inferred from sequence or structural similarity from UniProtKB).
GO:0032781; Biological process: positive regulation of ATPase activity (inferred from sequence or structural similarity from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR004241; MAP1_LC3.
Graphical view of domain structure.
PANTHER PTHR10969; MAP1_LC3; 1.
Pfam PF02991; MAP1_LC3; 1.
Pfam graphical view of domain structure.
BLOCKS P60520.
Genome annotation databases
Ensembl ENSG00000034713; Homo sapiens. [Contig view]
GeneID 11345; -.
KEGG hsa:11345; -.
Phylogenomic databases
HOGENOM P60520; -.
HOVERGEN P60520; -.
Other
SOURCE GABARAPL2; Homo sapiens.
ProtoNet P60520.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Golgi apparatus; Phosphoprotein; Protein transport; Transport.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom  To Length Description FTId
CHAIN   1   117  117     Gamma-aminobutyric acid receptor-associated protein-like 2. PRO_0000212373
REGION   1    22  22     Interaction with beta-tubulin (By similarity). 
REGION   36    68  33     Interaction with GABRG2 (Potential). 
MOD_RES   10    10        Phosphoserine. 
MOD_RES   39    39        Phosphoserine. 
CONFLICT   29    29        V -> F (in Ref. 4; AAD27779). 
Sequence information
Length: 117 AA [This is the length of the unprocessed precursor] Molecular weight: 13667 Da [This is the MW of the unprocessed precursor] CRC64: 17ACB540FD5B975B [This is a checksum on the sequence]
        10         20         30         40         50         60 
MKWMFKEDHS LEHRCVESAK IRAKYPDRVP VIVEKVSGSQ IVDIDKRKYL VPSDITVAQF 

        70         80         90        100        110 
MWIIRKRIQL PSEKAIFLFV DKTVPQSSLT MGQLYEKEKD EDGFLYVAYS GENTFGF 

P60520 in FASTA format

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