ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry P08294


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name SODE_HUMAN
Primary accession number P08294
Secondary accession numbers Q5U781 Q6FHA2
Integrated into Swiss-Prot on August 1, 1988
Sequence was last modified on May 30, 2006 (Sequence version 2)
Annotations were last modified on    September 2, 2008 (Entry version 99)
Name and origin of the protein
Protein name Extracellular superoxide dismutase [Cu-Zn] [Precursor]
Synonyms EC-SOD
EC 1.15.1.1
Gene name
Name: SOD3
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], PARTIAL PROTEIN SEQUENCE, AND VARIANT THR-58.
PubMed=3476950 [NCBI, ExPASy, EBI, Israel, Japan]
Hjalmarsson K., Marklund S.L., Engstroem A., Edlund T.;
"Isolation and sequence of complementary DNA encoding human extracellular superoxide dismutase.";
Proc. Natl. Acad. Sci. U.S.A. 84:6340-6344(1987).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANT THR-58.
TISSUE=Blood;
DOI=10.1006/geno.1994.1357; PubMed=7959763 [NCBI, ExPASy, EBI, Israel, Japan]
Folz R.J., Crapo J.D.;
"Extracellular superoxide dismutase (SOD3): tissue-specific expression, genomic characterization, and computer-assisted sequence analysis of the human EC SOD gene.";
Genomics 22:162-171(1994).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT THR-58.
Halleck A., Ebert L., Mkoundinya M., Schick M., Eisenstein S., Neubert P., Kstrang K., Schatten R., Shen B., Henze S., Mar W., Korn B., Zuo D., Hu Y., LaBaer J.;
"Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201).";
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS THR-58; THR-91 AND GLY-231.
Livingston R.J., Rieder M.J., Chung M.-W., Ritchie T.K., Olson A.N., Nguyen C.P., Nguyen D.A., Poel C.L., Chambers S.W., Schackwitz W.S., Sherwood J.K., Sherwood A.M., Leithauser B.J., Nickerson D.A.;
"NIEHS-SNPs, environmental genome project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu).";
Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT THR-58.
TISSUE=Colon;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
GLYCATION AT LYS-229 AND LYS-230.
DOI=10.1016/0891-5849(92)90016-A; PubMed=1505778 [NCBI, ExPASy, EBI, Israel, Japan]
Adachi T., Ohta H., Hayashi K., Hirano K., Marklund S.L.;
"The site of nonenzymic glycation of human extracellular-superoxide dismutase in vitro.";
Free Radic. Biol. Med. 13:205-210(1992).
[7]
REVIEW.
DOI=10.1016/j.biocel.2005.06.012; PubMed=16087389 [NCBI, ExPASy, EBI, Israel, Japan]
Nozik-Grayck E., Suliman H.B., Piantadosi C.A.;
"Extracellular superoxide dismutase.";
Int. J. Biochem. Cell Biol. 37:2466-2471(2005).
[8]
GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-107, AND MASS SPECTROMETRY.
TISSUE=Plasma;
DOI=10.1021/pr0502065; PubMed=16335952 [NCBI, ExPASy, EBI, Israel, Japan]
Liu T., Qian W.-J., Gritsenko M.A., Camp D.G. II, Monroe M.E., Moore R.J., Smith R.D.;
"Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.";
J. Proteome Res. 4:2070-2080(2005).
[9]
VARIANT GLY-231.
PubMed=8034674 [NCBI, ExPASy, EBI, Israel, Japan]
Sandstrom J., Nilsson P., Karlsson K., Marklund S.L.;
"10-fold increase in human plasma extracellular superoxide dismutase content caused by a mutation in heparin-binding domain.";
J. Biol. Chem. 269:19163-19166(1994).
[10]
VARIANT GLY-231.
PubMed=7662997 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada H., Yamada Y., Adachi T., Goto H., Ogasawara N., Futenma A., Kitano M., Hirano K., Kato K.;
"Molecular analysis of extracellular-superoxide dismutase gene associated with high level in serum.";
Jpn. J. Hum. Genet. 40:177-184(1995).
[11]
VARIANT GLY-231.
PubMed=8546689 [NCBI, ExPASy, EBI, Israel, Japan]
Adachi T., Yamada H., Yamada Y., Morihara N., Yamazaki N., Murakami T., Futenma A., Kato K., Hirano K.;
"Substitution of glycine for arginine-213 in extracellular-superoxide dismutase impairs affinity for heparin and endothelial cell surface.";
Biochem. J. 313:235-239(1996).
[12]
VARIANT GLY-231.
PubMed=8864862 [NCBI, ExPASy, EBI, Israel, Japan]
Adachi T., Morihara N., Yamazaki N., Yamada H., Futenma A., Kato K., Hirano K.;
"An arginine-213 to glycine mutation in human extracellular-superoxide dismutase reduces susceptibility to trypsin-like proteinases.";
J. Biochem. 120:184-188(1996).
Comments
  • FUNCTION: Protect the extracellular space from toxic effect of reactive oxygen intermediates by converting superoxide radicals into hydrogen peroxide and oxygen.
  • CATALYTIC ACTIVITY: 2 superoxide + 2 H+ = O2 + H2O2.
  • COFACTOR: Binds 1 copper ion per subunit (By similarity).
  • COFACTOR: Binds 1 zinc ion per subunit (By similarity).
  • SUBUNIT: Homotetramer.
  • SUBCELLULAR LOCATION: Secreted, extracellular space. Note=99% of EC-SOD is anchored to heparan sulfate proteoglycans in the tissue interstitium, and 1% is located in the vasculature in equilibrium between the plasma and the endothelium.
  • TISSUE SPECIFICITY: Expressed in blood vessels, heart, lungs, kidney and placenta. Major SOD isoenzyme in extracellular fluids such as plasma, lymph and synovial fluid.
  • POLYMORPHISM: The variant Gly-231 which is found in about 2.2% of individual displays a 10-fold increased plasma EC-SOD content due to reduced heparin-binding affinity and thus the impairment of its binding ability to endothelial cell surface.
  • SIMILARITY: Belongs to the Cu-Zn superoxide dismutase family.
  • WEB RESOURCE: Name=Wikipedia; Note=Superoxide dismutase entry; URL="http://en.wikipedia.org/wiki/Superoxide_dismutase";.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
J02947; AAA66000.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U10116; AAA62278.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
CR541853; CAG46651.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY787834; AAV40827.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC014418; AAH14418.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A28301; DSHUEC.
RefSeq NP_003093.2; -.
UniGene Hs.2420
3D structure databases
HSSP P00441; 1OZU. [HSSP ENTRY / PDB]
ModBase P08294.
Polymorphism databases
NIEHS-SNPs SOD3.
Organism-specific databases
H-InvDB HIX0004137; -.
HGNC HGNC:11181; SOD3.
GenAtlas SOD3.
HPA CAB008671; -.
MIM 185490; gene. [NCBI / EBI]
PharmGKB PA36018; -.
GeneCards P08294.
Gene expression databases
ArrayExpress P08294; -.
CleanEx HS_SOD3; -.
GermOnline ENSG00000109610; Homo sapiens.
Ontologies
GO
GO:0005625; Cellular component: soluble fraction (traceable author statement from ProtInc).
GO:0004784; Molecular function: superoxide dismutase activity (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR001424; SOD_Cu_Zn.
Graphical view of domain structure.
Gene3D G3DSA:2.60.40.200; SOD_Cu_Zn; 1.
PANTHER PTHR10003; SOD_Cu_Zn; 1.
Pfam PF00080; Sod_Cu; 1.
Pfam graphical view of domain structure.
PRINTS PR00068; CUZNDISMTASE.
ProDom PD000469; SOD_CU_ZN; 1.
[Domain structure / List of seq. sharing at least 1 domain]
PROSITE PS00087; SOD_CU_ZN_1; 1.
PS00332; SOD_CU_ZN_2; 1.
BLOCKS P08294.
Proteomic databases
PeptideAtlas P08294; -.
Genome annotation databases
Ensembl ENSG00000109610; Homo sapiens. [Contig view]
GeneID 6649; -.
KEGG hsa:6649; -.
Phylogenomic databases
HOGENOM P08294; -.
HOVERGEN P08294; -.
Other
SOURCE SOD3; Homo sapiens.
ProtoNet P08294.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Antioxidant; Copper; Direct protein sequencing; Glycation; Glycoprotein; Heparin-binding; Metal-binding; Oxidoreductase; Polymorphism; Secreted; Signal; Zinc.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
SIGNAL   1    18  18      
CHAIN   19   240  222     Extracellular superoxide dismutase [Cu-Zn]. PRO_0000032855
METAL   114   114        Copper; catalytic (By similarity). 
METAL   116   116        Copper; catalytic (By similarity). 
METAL   131   131        Copper; catalytic (By similarity). 
METAL   131   131        Zinc; structural (By similarity). 
METAL   139   139        Zinc; structural (By similarity). 
METAL   142   142        Zinc; structural (By similarity). 
METAL   145   145        Zinc; structural (By similarity). 
METAL   181   181        Copper; catalytic (By similarity). 
SITE   41    41  1     Not glycated. 
SITE   92    92  1     Not glycated. 
SITE   238   238  1     Not glycated. 
CARBOHYD   107   107        N-linked (GlcNAc...). 
CARBOHYD   229   229        N-linked (Glc) (glycation); in vitro. 
CARBOHYD   230   230        N-linked (Glc) (glycation); in vitro. 
DISULFID   125   207        By similarity. 
VARIANT   58    58  1     A -> T (in dbSNP:rs2536512 [NCBI]). VAR_020776 
VARIANT   91    91  1     A -> T (in dbSNP:rs17879876 [NCBI]). VAR_020777 
VARIANT   231   231  1     R -> G (in dbSNP:rs1799895 [NCBI]). VAR_014705 
Sequence information
Length: 240 AA [This is the length of the unprocessed precursor] Molecular weight: 25851 Da [This is the MW of the unprocessed precursor] CRC64: 585B8DEBFC506CF4 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLALLCSCLL LAAGASDAWT GEDSAEPNSD SAEWIRDMYA KVTEIWQEVM QRRDDDGALH 

        70         80         90        100        110        120 
AACQVQPSAT LDAAQPRVTG VVLFRQLAPR AKLDAFFALE GFPTEPNSSS RAIHVHQFGD 

       130        140        150        160        170        180 
LSQGCESTGP HYNPLAVPHP QHPGDFGNFA VRDGSLWRYR AGLAASLAGP HSIVGRAVVV 

       190        200        210        220        230        240 
HAGEDDLGRG GNQASVENGN AGRRLACCVV GVCGPGLWER QAREHSERKK RRRESECKAA 

P08294 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by ca flag CBR Canada Mirror sites: Australia  Brazil  China  Korea  Switzerland
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!