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UniProtKB/Swiss-Prot entry P00367


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DHE3_HUMAN
Primary accession number P00367
Secondary accession number Q5TBU3
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on January 1, 1990 (Sequence version 2)
Annotations were last modified on    November 25, 2008 (Entry version 108)
Name and origin of the protein
Protein name Glutamate dehydrogenase 1, mitochondrial [Precursor]
Synonyms GDH
EC 1.4.1.3
Gene name
Name: GLUD1
Synonyms: GLUD
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Brain, and Liver;
DOI=10.1016/0006-291X(87)90381-0; PubMed=3426581 [NCBI, ExPASy, EBI, Israel, Japan]
Nakatani Y., Banner C., von Herrat M., Schneider M.E., Smith H.H., Freese E.;
"Comparison of human brain and liver glutamate dehydrogenase cDNAS.";
Biochem. Biophys. Res. Commun. 149:405-410(1987).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Liver;
DOI=10.1016/S0006-291X(88)80440-6; PubMed=3377777 [NCBI, ExPASy, EBI, Israel, Japan]
Amuro N., Yamaura M., Goto Y., Okazaki T.;
"Molecular cloning and nucleotide sequence of the cDNA for human liver glutamate dehydrogenase precursor.";
Biochem. Biophys. Res. Commun. 152:1395-1400(1988).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
DOI=10.1093/nar/16.13.6237; PubMed=3399399 [NCBI, ExPASy, EBI, Israel, Japan]
Nakatani Y., Schneider M.E., Banner C., Freese E.;
"Complete nucleotide sequence of human glutamate dehydrogenase cDNA.";
Nucleic Acids Res. 16:6237-6237(1988).
[4]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Liver;
PubMed=3368458 [NCBI, ExPASy, EBI, Israel, Japan]
Mavrothalassitis G., Tzimagiorgis G., Mitsialis A., Zannis V., Plaitakis A., Papamatheakis J., Moschonas N.;
"Isolation and characterization of cDNA clones encoding human liver glutamate dehydrogenase: evidence for a small gene family.";
Proc. Natl. Acad. Sci. U.S.A. 85:3494-3498(1988).
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
TISSUE=Placenta;
DOI=10.1006/geno.1993.1152; PubMed=8486350 [NCBI, ExPASy, EBI, Israel, Japan]
Michaelidis T.M., Tzimagiorgis G., Moschonas N.K., Papamatheakis J.;
"The human glutamate dehydrogenase gene family: gene organization and structural characterization.";
Genomics 16:150-160(1993).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature02462; PubMed=15164054 [NCBI, ExPASy, EBI, Israel, Japan]
Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J., Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.;
"The DNA sequence and comparative analysis of human chromosome 10.";
Nature 429:375-381(2004).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Duodenum, and Eye;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[8]
PROTEIN SEQUENCE OF 54-558.
TISSUE=Liver;
PubMed=429360 [NCBI, ExPASy, EBI, Israel, Japan]
Julliard J.H., Smith E.L.;
"Partial amino acid sequence of the glutamate dehydrogenase of human liver and a revision of the sequence of the bovine enzyme.";
J. Biol. Chem. 254:3427-3438(1979).
[9]
PROTEIN SEQUENCE OF 54-69.
TISSUE=Liver;
DOI=10.1002/elps.11501301201; PubMed=1286669 [NCBI, ExPASy, EBI, Israel, Japan]
Hochstrasser D.F., Frutiger S., Paquet N., Bairoch A., Ravier F., Pasquali C., Sanchez J.-C., Tissot J.-D., Bjellqvist B., Vargas R., Appel R.D., Hughes G.J.;
"Human liver protein map: a reference database established by microsequencing and gel comparison.";
Electrophoresis 13:992-1001(1992).
[10]
NUCLEOTIDE SEQUENCE [MRNA] OF 301-558.
TISSUE=Brain;
PubMed=3585334 [NCBI, ExPASy, EBI, Israel, Japan]
Banner C., Silverman S., Thomas J.W., Lampel K.A., Vitkovic L., Huie D., Wenthold R.J.;
"Isolation of a human brain cDNA for glutamate dehydrogenase.";
J. Neurochem. 49:246-252(1987).
[11]
PROTEIN SEQUENCE OF 481-496, AND MASS SPECTROMETRY.
TISSUE=Brain, and Cajal-Retzius cell;
Lubec G., Vishwanath V.;
Submitted (MAR-2007) to UniProtKB.
[12]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 540-558.
DOI=10.1007/BF00217767; PubMed=8314555 [NCBI, ExPASy, EBI, Israel, Japan]
Tzimagiorgis G., Leversha M.A., Chroniary K., Goulielmos G., Sargent C.A., Ferguson-Smith M., Moschonas N.K.;
"Structure and expression analysis of a member of the human glutamate dehydrogenase (GLUD) gene family mapped to chromosome 10p11.2.";
Hum. Genet. 91:433-438(1993).
[13]
CHARACTERIZATION OF VARIANT TYR-507, AND ALLOSTERIC REGULATION.
DOI=10.1006/jmbi.2001.4499; PubMed=11254391 [NCBI, ExPASy, EBI, Israel, Japan]
Smith T.J., Peterson P.E., Schmidt T., Fang J., Stanley C.A.;
"Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation.";
J. Mol. Biol. 307:707-720(2001).
[14]
MUTAGENESIS OF SER-501 AND ARG-516, CHARACTERIZATION OF VARIANT TYR-507, AND ALLOSTERIC REGULATION.
DOI=10.1042/0264-6021:3630081; PubMed=11903050 [NCBI, ExPASy, EBI, Israel, Japan]
Fang J., Hsu B.Y.L., MacMullen C.M., Poncz M., Smith T.J., Stanley C.A.;
"Expression, purification and characterization of human glutamate dehydrogenase (GDH) allosteric regulatory mutations.";
Biochem. J. 363:81-87(2002).
[15]
X-RAY CRYSTALLOGRAPHY (2.7 ANGSTROMS) OF 54-558.
DOI=10.1016/S0022-2836(02)00161-4; PubMed=12054821 [NCBI, ExPASy, EBI, Israel, Japan]
Smith T.J., Schmidt T., Fang J., Wu J., Siuzdak G., Stanley C.A.;
"The structure of apo human glutamate dehydrogenase details subunit communication and allostery.";
J. Mol. Biol. 318:765-777(2002).
[16]
X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF 63-558 OF MUTANT ALA-516, AND ALLOSTERIC REGULATION.
DOI=10.1021/bi0206917; PubMed=12653548 [NCBI, ExPASy, EBI, Israel, Japan]
Banerjee S., Schmidt T., Fang J., Stanley C.A., Smith T.J.;
"Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulation.";
Biochemistry 42:3446-3456(2003).
[17]
REVIEW ON VARIANTS.
DOI=10.1002/(SICI)1098-1004(1999)13:5<351::AID-HUMU3>3.3.CO;2-I; PubMed=10338089 [NCBI, ExPASy, EBI, Israel, Japan]
Meissner T., Beinbrech B., Mayatepek E.;
"Congenital hyperinsulinism: molecular basis of a heterogeneous disease.";
Hum. Mutat. 13:351-361(1999).
[18]
VARIANTS HHS LEU-498; SER-499; ASP-499; PRO-501 AND TYR-507.
DOI=10.1056/NEJM199805073381904; PubMed=9571255 [NCBI, ExPASy, EBI, Israel, Japan]
Stanley C.A., Lieu Y.K., Hsu B.Y.L., Burlina A.B., Greenberg C.R., Hopwood N.J., Perlman K., Rich B.H., Zammarchi E., Poncz M.;
"Hyperinsulinism and hyperammonemia in infants with regulatory mutations of the glutamate dehydrogenase gene.";
N. Engl. J. Med. 338:1352-1357(1998).
[19]
VARIANTS HHS LYS-318 AND ALA-349.
DOI=10.1016/S0022-3476(00)90052-0; PubMed=10636977 [NCBI, ExPASy, EBI, Israel, Japan]
Miki Y., Taki T., Ohura T., Kato H., Yanagisawa M., Hayashi Y.;
"Novel missense mutations in the glutamate dehydrogenase gene in the congenital hyperinsulinism-hyperammonemia syndrome.";
J. Pediatr. 136:69-72(2000).
[20]
VARIANTS HHS CYS-274 AND HIS-322.
DOI=10.1007/s004390000432; PubMed=11214910 [NCBI, ExPASy, EBI, Israel, Japan]
Santer R., Kinner M., Passarge M., Superti-Furga A., Mayatepek E., Meissner T., Schneppenheim R., Schaub J.;
"Novel missense mutations outside the allosteric domain of glutamate dehydrogenase are prevalent in European patients with the congenital hyperinsulinism-hyperammonemia syndrome.";
Hum. Genet. 108:66-71(2001).
[21]
VARIANTS HHS CYS-270; CYS-274; THR-318; CYS-319; CYS-322 AND HIS-322.
DOI=10.1210/jc.86.4.1782; PubMed=11297618 [NCBI, ExPASy, EBI, Israel, Japan]
MacMullen C., Fang J., Hsu B.Y.L., Kelly A., de Lonlay-Debeney P., Saudubray J.-M., Ganguly A., Smith T.J., Stanley C.A., Brown R., Buist N., Dasouki M., Fefferman R., Grange D., Karaviti L., Luedke C., Marriage B., McLaughlin J., Perlman K., Seashore M., van Vliet G.;
"Hyperinsulinism/hyperammonemia syndrome in children with regulatory mutations in the inhibitory guanosine triphosphate-binding domain of glutamate dehydrogenase.";
J. Clin. Endocrinol. Metab. 86:1782-1787(2001).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X07674; CAA30521.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M20867; AAA52526.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37154; AAA52525.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X07769; CAA30598.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
J03248; AAA52523.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66300; CAA46994.2; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66301; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66302; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66303; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66304; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66305; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66306; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66307; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66308; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66309; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66311; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66312; CAA46994.2; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL136982; CAI17120.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC040132; AAH40132.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC112946; AAI12947.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X67491; CAA47830.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A28208; DEHUE.
I37424; I37424.
S29331; S29331.
S60192; S60192.
RefSeq NP_005262.1; -.
UniGene Hs.500409
3D structure databases
PDB
1L1F; X-ray; 2.70 A; A/B/C/D/E/F=54-558.[ExPASy / RCSB / EBI]
1NR1; X-ray; 3.30 A; A/B/C/D/E/F=63-558.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1L1F; -.
1NR1; -.
ModBase P00367.
Protein-protein interaction databases
IntAct P00367; -.
PTM databases
PhosphoSite P00367; -.
Enzyme and pathway databases
BioCyc MetaCyc:MON-11464; -.
Reactome REACT_13; Metabolism of amino acids.
2D gel databases
SWISS-2DPAGE P00367; -.
REPRODUCTION-2DPAGE IPI00016801; -.
Siena-2DPAGE P00367; -.
Organism-specific databases
H-InvDB HIX0009003; -.
HIX0035678; -.
HGNC HGNC:4335; GLUD1.
GenAtlas GLUD1.
MIM 138130; gene. [NCBI / EBI]
606762; phenotype. [NCBI / EBI]
Orphanet 657; Persistent hyperinsulinemic hypoglycemia of infancy.
PharmGKB PA28737; -.
GeneCards P00367.
Gene expression databases
CleanEx HS_GLUD1; -.
GermOnline ENSG00000148672; Homo sapiens.
Ontologies
GO
GO:0005759; Cellular component: mitochondrial matrix (inferred from electronic annotation from UniProtKB-SubCell).
GO:0005524; Molecular function: ATP binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004353; Molecular function: glutamate dehydrogenase [NAD(P)+] activity (inferred from electronic annotation from EC).
GO:0004352; Molecular function: glutamate dehydrogenase activity (inferred from direct assay from UniProtKB).
GO:0005525; Molecular function: GTP binding (inferred from electronic annotation from UniProtKB-KW).
GO:0006538; Biological process: glutamate catabolic process (inferred from direct assay from UniProtKB).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
GO:0007169; Biological process: transmembrane receptor protein tyrosine kinase signaling pathway (non-traceable author statement from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR006095; Glu/Leu/Phe/Val_DHase.
IPR006096; Glu/Leu/Phe/Val_DHase_C.
IPR006097; Glu/Leu/Phe/Val_DHase_dimer.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
PANTHER PTHR11606:SF2; GLFV_DH; 1.
Pfam PF00208; ELFV_dehydrog; 1.
PF02812; ELFV_dehydrog_N; 1.
Pfam graphical view of domain structure.
PRINTS PR00082; GLFDHDRGNASE.
PROSITE PS00074; GLFV_DEHYDROGENASE; 1.
ProtoNet P00367.
Proteomic databases
PeptideAtlas P00367; -.
Genome annotation databases
Ensembl ENSG00000148672; Homo sapiens. [Contig view]
GeneID 2746; -.
KEGG hsa:2746; -.
NMPDR fig|9606.3.peg.4285; -.
Phylogenomic databases
HOGENOM P00367; -.
HOVERGEN P00367; -.
Other
DrugBank DB00142; L-Glutamic Acid.
DB00157; NADH.
LinkHub P00367; -.
NextBio 10824; -.
SOURCE GLUD1; Homo sapiens.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Acetylation; ATP-binding; Direct protein sequencing; Disease mutation; GTP-binding; Mitochondrion; NADP; Nucleotide-binding; Oxidoreductase; Phosphoprotein; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    53  53     Mitochondrion. 
CHAIN   54   558  505     Glutamate dehydrogenase 1, mitochondrial. PRO_0000007206
NP_BIND   141   143  3     NAD (By similarity). 
ACT_SITE   183   183         
BINDING   147   147        Substrate (By similarity). 
BINDING   171   171        Substrate (By similarity). 
BINDING   176   176        NAD (By similarity). 
BINDING   252   252        NAD (By similarity). 
BINDING   266   266        GTP (By similarity). 
BINDING   270   270        GTP (By similarity). 
BINDING   319   319        GTP (By similarity). 
BINDING   322   322        GTP (By similarity). 
BINDING   438   438        Substrate (By similarity). 
BINDING   444   444        NAD (By similarity). 
BINDING   450   450        ADP (By similarity). 
BINDING   516   516        ADP (By similarity). 
MOD_RES   84    84        N6-acetyllysine (By similarity). 
MOD_RES   135   135        Phosphotyrosine (By similarity). 
MOD_RES   227   227        Phosphoserine (By similarity). 
MOD_RES   503   503        N6-acetyllysine (By similarity). 
MOD_RES   512   512        Phosphotyrosine (By similarity). 
MOD_RES   527   527        N6-acetyllysine (By similarity). 
VARIANT   270   270  1     S -> C (in HHS; diminished sensitivity to GTP). VAR_016760 [3D]
VARIANT   274   274  1     R -> C (in HHS; diminished sensitivity to GTP). VAR_016761 [3D]
VARIANT   318   318  1     R -> K (in HHS). VAR_009270 [3D]
VARIANT   318   318  1     R -> T (in HHS; diminished sensitivity to GTP). VAR_016762 [3D]
VARIANT   319   319  1     Y -> C (in HHS). VAR_016763 [3D]
VARIANT   322   322  1     R -> C (in HHS; diminished sensitivity to GTP). VAR_016764 [3D]
VARIANT   322   322  1     R -> H (in HHS; diminished sensitivity to GTP). VAR_016765 [3D]
VARIANT   349   349  1     E -> A (in HHS). VAR_009271 [3D]
VARIANT   498   498  1     S -> L (in HHS). VAR_008666 [3D]
VARIANT   499   499  1     G -> D (in HHS). VAR_008667 [3D]
VARIANT   499   499  1     G -> S (in HHS). VAR_008668 [3D]
VARIANT   501   501  1     S -> P (in HHS). VAR_008669 [3D]
VARIANT   507   507  1     H -> Y (in HHS; abolishes inhibition by ATP; no effect on activation by ADP). VAR_008670 [3D]
MUTAGEN   501   501        S->A: Reduces activity and inhibition by GTP. 
MUTAGEN   507   507        H->A: Strongly reduces inhibition by GTP. 
MUTAGEN   516   516        R->A: Abolishes activation by ADP. 
HELIX   66    90  25      
HELIX   91    93  3      
HELIX   95    97  3      
HELIX   99   102  4      
HELIX   104   109  6      
STRAND   113   123  11      
STRAND   125   127  3      
STRAND   129   138  10      
STRAND   142   152  11      
HELIX   158   174  17      
STRAND   180   186  7      
HELIX   190   192  3      
HELIX