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Aldente version 11/02/2008

All	Sample	Protein	Peptide	Thresholds	Output		Settings	About	No help
Sample Sample name Mw pI Peak list new format Upload a file File type pkm dta pkt Mass list Mass and intensity by mass by intensity Protein Database(s) UniProtKB/Swiss-Prot UniProtKB/TrEMBL Contaminants Predefined Taxon *** Choose one in the list *** All -Viruses -Bacteria --Firmicutes ---Bacillus subtilis ---Other Firmicutes --Escherichia coli --Other Bacteria -Eukaryota --Dictyostelium discoideum --Kinetoplastida --Metazoa ---Insecta ----Drosophila melanogaster ----Other Insecta ---Echinodermata ---Chordata ----Vertebrata -----Chondrichthyes -----Actinopterygii -----Amphibia -----Mammalia ------Homo sapiens ------Rodentia -------Rattus norvegicus -------Mus musculus -------Other Rodentia ------Oryctolagus cuniculus ------Bos taurus ------Other Mammalia -----Aves -----Other Vertebrata ----Other Chordata ---Other Metazoa --Fungi ---Schizosaccharomyces pombe ---Saccharomyces cerevisiae ---Other Fungi --Viridiplantae ---Streptophyta ----Arabidopsis thaliana ----Zea mays ----Other Streptophyta ---Chlorophyta ---Other Viridiplantae --Other Eukaryota -Archaea Unclassified NCBI TaxID(s) Mw min Mw max pI min pI max Varsplices Fragments Keyword(s) Keywords mode And Or Limit to AC Peptide Digestion Enzyme Trypsin Trypsin Low Trypsin High LysC LysN CNBr ArgC AspN AspN + GluN AspN + LysC AspN + GluN + LysC GluC bicarbonate GluC phosphate Chymotrypsin Low Chymotrypsin High Tryp + Chymo Pepsin pH 1.3 Pepsin pH > 2 Proteinase K Missed cleavage 0 1 2 3 Resolution Monoisotopic Average Ion mode [M] [M+H] [M-H] PTMs Use PTM Modifications Amidation (AMID) Carboxyamidomethyl (CAM) Carboxymethyl (CM) Esterification (ESTR) ICATd0 (ICAT0) ICATd8 (ICAT8) IT9_light (IT9L) IT9_heavy (IT9H) IT5_light (IT5L) IT5_heavy (IT5H) Oxidation Met (MSO) Oxidation Trp, His (Ox(WH)) Propionamide (PAM) Phosphorylation Ser, thr (P(ST)) Phosphorylation Tyr (P(Y)) User defined (USER) Label Locus Formula Mode Max Score Fixed Variable Fixed Variable Thresholds Spectrometer shift max ± (Dalton) Spectrometer slope max ± (ppm) Spectrometer internal error max ± (ppm) Minimum number of Hits Output Maximum number of proteins to display Output format HTML HTML light (No javascript) Aldente Sort peptides (HTML format) By Position By Mass Your E-mail address

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