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Definitions
Avirulent strain: A strain of a normally pathogenic organism that is not pathogenic, often for unknown reasons. Avirulent strains have been historically studied because they are safer to manipulate and more recently studied to understand what causes virulence within groups of bacteria.
Bacterial biocontrol: Avirulent bacteria which controls the growth of another, pathogenic bacteria. An example is Agrobacterium radiobacter strain K84 which produces an antibiotic against other biovar II Agrobacteria.
Commensal: An organism living in an external relationship with another, in which one partner may gain more than the other. Some commensal bacteria become pathogenic under certain growth conditions.
Endophyte: An organism living within the tissues of a plant without causing it substantive harm.
Endosymbiont: An organism living inside the cells of another. The association typically behaves as a single organism, producing a benefit not available to the individual partners for example nitogen-fixing bacteria and their host plants.
Epibiont: An organism which lives on the surface of another, in a non-obligatory, symbiotic association.
Parasite: An organism living in a symbiotic relationship with another in which the parasite benefits from the relationship while the host is harmed. Parasites can be extracellular or intracellular.
Pathogen: A disease producing bacterium. These can be intracellular or extracellular, obligate or not. Some organisms are only pathogenic under certain growth conditions.
Saprophyte: An organism living heterotrophically on dead organic matter.
Symbiont: An organism living in an intimate, external relationship with another, in which the mutual benefits usually outweigh the disadvantages.
[Animal commensal ] [Animal endosymbiont ] [Animal intracellular (facultative) ] [Animal parasite (intracellular) ] [Animal pathogen ] [Animal symbiont ] [Archaeal commensal ] [Archaeal host for Naoarchaeum equitans ] [Archaeal pathogen ] [Avirulent strain ] [Bacterial biocontrol ] [Dinoflagellate pathogen ] [Dinoflagellate symbiont (obligate symbiont) ] [Epibiont ] [Phototrophic consortium epibiont ] [Plant commensal ] [Plant endophyte ] [Plant endophyte? ] [Plant pathogen ] [Plant saprophyte ] [Plant symbiont ] [Protist endosymbiont ] [Saprophyte ]

Animal commensal
Host: Aves
LACJF Lactobacillus johnsonii (strain FI9785)
STAAD Staphylococcus aureus (strain ED98)
Host: Mammalia
ACTSZ Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
AGGAN Aggregatibacter aphrophilus (strain NJ8700) (Haemophilus aphrophilus)
AKKM8 Akkermansia muciniphila (strain ATCC BAA-835)
ANAPD Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) (Peptostreptococcus prevotii) (Peptococcus prevotii)
ANACI Anaplasma centrale (strain Israel) (Anaplasma marginale subsp. centrale (strain Israel))
BACFR Bacteroides fragilis
BACFN Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
BACTN Bacteroides thetaiotaomicron
BACV8 Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
BIFAA Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083)
BIFA0 Bifidobacterium animalis subsp. lactis (strain AD011)
BIFLB Bifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219)
BIFAS Bifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314)
BIFLO Bifidobacterium longum
BIFLD Bifidobacterium longum (strain DJO10A)
BIFLI Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12)
CAMC1 Campylobacter concisus (strain 13826)
CAMC5 Campylobacter curvus (strain 525.92)
CAMJD Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)
CAMJ8 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
CLOD6 Clostridium difficile (strain 630)
CLODC Clostridium difficile (strain CD196)
CLODR Clostridium difficile (strain R20291)
CLOPE Clostridium perfringens
CLOP1 Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
CLOPS Clostridium perfringens (strain SM101 / Type A)
CORA7 Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) (Corynebacterium nigricans)
CORJK Corynebacterium jeikeium (strain K411)
CORU7 Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)
ENTFA Enterococcus faecalis (Streptococcus faecalis)
ECOD1 Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1)
ECOBD Escherichia coli (strain B / BL21-DE3)
ECOBW Escherichia coli (strain K12 / BW2952)
ECODH Escherichia coli (strain K12 / DH10B)
ECOLI Escherichia coli (strain K12)
ECOSE Escherichia coli (strain SE11)
ECO8A Escherichia coli O8 (strain IAI1)
ECO81 Escherichia coli O81 (strain ED1a)
ECOHS Escherichia coli O9:H4 (strain HS)
ESCF3 Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
EUBE2 Eubacterium eligens (strain ATCC 27750 / VPI C15-48)
EUBR3 Eubacterium rectale (strain ATCC 33656 / VPI 0990)
FINM2 Finegoldia magna (strain ATCC 29328) (Peptostreptococcus magnus)
FUSNN Fusobacterium nucleatum subsp. nucleatum
HAEIN Haemophilus influenzae
HAEIE Haemophilus influenzae (strain PittEE)
HAEIG Haemophilus influenzae (strain PittGG)
HAEPS Haemophilus parasuis serovar 5 (strain SH0165)
HAES1 Haemophilus somnus (strain 129Pt) (Histophilus somni (strain 129Pt))
HAES2 Haemophilus somnus (strain 2336) (Histophilus somni (strain 2336))
HELP1 Helicobacter pylori (strain 51)
HELP5 Helicobacter pylori (strain 52)
HELPG Helicobacter pylori (strain G27)
HELP2 Helicobacter pylori (strain P12)
KLEP7 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
LACAC Lactobacillus acidophilus
LACBA Lactobacillus brevis (strain ATCC 367 / JCM 1170)
LACC3 Lactobacillus casei (strain ATCC 334)
LACCB Lactobacillus casei (strain BL23)
LACDB Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
LACGA Lactobacillus gasseri (strain ATCC 33323 / DSM 20243)
LACPL Lactobacillus plantarum
LACPJ Lactobacillus plantarum (strain JDM1)
LACRD Lactobacillus reuteri (strain DSM 20016)
LACRJ Lactobacillus reuteri (strain JCM 1112)
LACRG Lactobacillus rhamnosus (strain ATCC 53103 / GG)
LACRL Lactobacillus rhamnosus (strain Lc 705)
LACS1 Lactobacillus salivarius subsp. salivarius (strain UCC118)
LACLS Lactococcus lactis subsp. cremoris (strain SK11)
MANSM Mannheimia succiniciproducens (strain MBEL55E)
METS3 Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)
METST Methanosphaera stadtmanae (strain DSM 3091)
MYCS2 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
MYCHP Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21)
NEIML Neisseria meningitidis (strain alpha14)
NEIMA Neisseria meningitidis serogroup A
NEIMB Neisseria meningitidis serogroup B
NEIM0 Neisseria meningitidis serogroup C (strain 053442)
NEIM8 Neisseria meningitidis serogroup C (strain 8013)
NEIMF Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
OCHA4 Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
PARD8 Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
PASMU Pasteurella multocida
PEDPA Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
PROAC Propionibacterium acnes
PROMH Proteus mirabilis (strain HI4320)
SANKS Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)
STAES Staphylococcus epidermidis (strain ATCC 12228)
STAEQ Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
STRA1 Streptococcus agalactiae serotype Ia
STRA3 Streptococcus agalactiae serotype III
STRS7 Streptococcus equi subsp. zooepidemicus (strain H70)
STRGC Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)
STRPN Streptococcus pneumoniae
STRP7 Streptococcus pneumoniae (strain 70585)
STRPJ Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1)
STRR6 Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
STRPI Streptococcus pneumoniae (strain Hungary19A-6)
STRZJ Streptococcus pneumoniae (strain JJA)
STRZP Streptococcus pneumoniae (strain P1031)
STRZT Streptococcus pneumoniae (strain Taiwan19F-14)
STRP2 Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
STRPZ Streptococcus pyogenes serotype M49 (strain NZ131)
STRTD Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9)
STRU0 Streptococcus uberis (strain ATCC BAA-854 / 0140J)
UREP2 Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736)
UREU1 Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western)
WOLSU Wolinella succinogenes
YERP3 Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
YERPY Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Host: Shellfish
VIBPA Vibrio parahaemolyticus
Host: humivorous scarab beetle larva
ELUMP Elusimicrobium minutum (strain Pei191)
Host: trematodes
NEORI Neorickettsia risticii (strain Illinois)



Animal endosymbiont
Host: Acanthamoeba sp. (intracellular obligate)
PARUW Protochlamydia amoebophila (strain UWE25)
Host: Acanthamoeba sp. TUMSJ-321 (intracellular obligate)
AMOA5 Amoebophilus asiaticus (strain 5a2)
Host: Aphids (obligate endosymbiont)
BUCAI Buchnera aphidicola subsp. Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium)
BUCA5 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)
BUCAT Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
BUCBP Buchnera aphidicola subsp. Baizongia pistaciae
BUCCC Buchnera aphidicola subsp. Cinara cedri
BUCAP Buchnera aphidicola subsp. Schizaphis graminum
HAMD5 Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)
Host: Bankia gouldi (shipworm)
TERTT Teredinibacter turnerae (strain ATCC 39867 / T7901)
Host: Blattella germanica (cockroach)
BLASB Blattabacterium sp. subsp. Blattella germanica (strain Bge) (Blattella germanica symbiotic bacterium)
Host: Calyptogena magnifica (intracellular)
RUTMC Ruthia magnifica subsp. Calyptogena magnifica
Host: Camponotus floridanus (ant)
BLOFL Blochmannia floridanus
Host: Camponotus pennsylvanicus (ant)
BLOPB Blochmannia pennsylvanicus (strain BPEN)
Host: Cicadellidae
BAUCH Baumannia cicadellinicola subsp. Homalodisca coagulata
Host: Culex pipiens (mosquito) (obligate intracellular)
WOLPP Wolbachia pipientis subsp. Culex pipiens (strain wPip)
Host: Diceroprocta semicincta (cicada)
HODCD Hodgkinia cicadicola (strain Dsem)
Host: Drosophila (obligate endosymbiont)
WOLPM Wolbachia pipientis wMel
WOLWR Wolbachia sp. subsp. Drosophila simulans (strain wRi)
Host: Eisenia foetida
VEREI Verminephrobacter eiseniae (strain EF01-2)
Host: Euplotes aediculatus (intracellular obligate)
POLNS Polynucleobacter necessarius (strain STIR1)
Host: Glossina (tsetse fly)
SODGM Sodalis glossinidius (strain morsitans)
Host: Glossina (tsetse fly) (obligate endosymbiont)
WIGBR Wigglesworthia glossinidia brevipalpis
Host: Periplaneta americana (cockroach)
BLASP Blattabacterium sp. subsp. Periplaneta americana (strain BPLAN) (Periplaneta americana symbiotic bacterium)
Host: Psyllid
CARRP Carsonella ruddii (strain PV)
Host: in Diceroprocta semicincta (cicada)
SULMS Sulcia muelleri (strain SMDSEM)
Host: nematode Brugia malayi (obligate endosymbiont)
WOLTR Wolbachia sp. subsp. Brugia malayi (strain TRS)



Animal intracellular (facultative)
PHEZH Phenylobacterium zucineum (strain HLK1)



Animal parasite (intracellular)
LAWIP Lawsonia intracellularis (strain PHE/MN1-00)
MYCA5 Mycoplasma arthritidis (strain 158L3-1)
MYCHJ Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)



Animal pathogen
Host: Aves
BORA1 Bordetella avium (strain 197N)
CAMJR Campylobacter jejuni (strain RM1221)
ECOK1 Escherichia coli O1:K1 / APEC
LISMO Listeria monocytogenes
LISMF Listeria monocytogenes serotype 4b (strain F2365)
MYCGA Mycoplasma gallisepticum
MYCS5 Mycoplasma synoviae (strain 53)
PASMU Pasteurella multocida
SALG2 Salmonella gallinarum (strain 287/91 / NCTC 13346)
STAAD Staphylococcus aureus (strain ED98)
Host: Fish
AERS4 Aeromonas salmonicida (strain A449)
ALISL Aliivibrio salmonicida (strain LFI1238) (Vibrio salmonicida (strain LFI1238))
EDWI9 Edwardsiella ictaluri (strain 93-146)
EDWTE Edwardsiella tarda (strain EIB202)
FLAPJ Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511)
LISMO Listeria monocytogenes
LISMF Listeria monocytogenes serotype 4b (strain F2365)
MYCMO Mycoplasma mobile
RENSM Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)
Host: Fish and crustaceans
VIBHB Vibrio harveyi (strain ATCC BAA-1116 / BB120)
Host: Insecta
BACAH Bacillus thuringiensis (strain Al Hakam)
BACHK Bacillus thuringiensis subsp. konkukian
LYSSC Lysinibacillus sphaericus (strain C3-41)
PHOAA Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))
PHOLL Photorhabdus luminescens subsp. laumondii
PSEAB Pseudomonas aeruginosa (strain UCBPP-PA14)
PSEE4 Pseudomonas entomophila (strain L48)
Host: Mammali
HAES2 Haemophilus somnus (strain 2336) (Histophilus somni (strain 2336))
Host: Mammalia
ACIB5 Acinetobacter baumannii (strain AB0057)
ACIB3 Acinetobacter baumannii (strain AB307-0294)
ACIBC Acinetobacter baumannii (strain ACICU)
ACIBT Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755)
ACIBY Acinetobacter baumannii (strain AYE)
ACIBS Acinetobacter baumannii (strain SDF)
ACTPJ Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
ACTP2 Actinobacillus pleuropneumoniae serotype 5b (strain L20)
ACTP7 Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
AERHH Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)
AGGAN Aggregatibacter aphrophilus (strain NJ8700) (Haemophilus aphrophilus)
ANAPD Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) (Peptostreptococcus prevotii) (Peptococcus prevotii)
ANACI Anaplasma centrale (strain Israel) (Anaplasma marginale subsp. centrale (strain Israel))
ANAPZ Anaplasma phagocytophilum (strain HZ)
ARCB4 Arcobacter butzleri (strain RM4018)
BACAN Bacillus anthracis
BACAA Bacillus anthracis (strain A0248)
BACAC Bacillus anthracis (strain CDC 684 / NRRL 3495)
BACC3 Bacillus cereus (strain 03BB102)
BACC7 Bacillus cereus (strain AH187)
BACC0 Bacillus cereus (strain AH820)
BACCR Bacillus cereus (strain ATCC 14579 / DSM 31)
BACC4 Bacillus cereus (strain B4264)
BACC2 Bacillus cereus (strain G9842)
BACCZ Bacillus cereus (strain ZK / E33L)
BACCN Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
BACFR Bacteroides fragilis
BACFN Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
BARBK Bartonella bacilliformis (strain ATCC 35685 / KC583)
BARGA Bartonella grahamii (strain as4aup)
BARHE Bartonella henselae (Rochalimaea henselae)
BARQU Bartonella quintana (Rochalimaea quintana)
BART1 Bartonella tribocorum (strain CIP 105476 / IBS 506)
BORBR Bordetella bronchiseptica (Alcaligenes bronchisepticus)
BORPA Bordetella parapertussis
BORPE Bordetella pertussis
BORAP Borrelia afzelii (strain PKo)
BORBU Borrelia burgdorferi (Lyme disease spirochete)
BORBZ Borrelia burgdorferi (strain ZS7)
BORDL Borrelia duttonii (strain Ly)
BORGA Borrelia garinii
BORHD Borrelia hermsii (strain DAH)
BORRA Borrelia recurrentis (strain A1)
BORT9 Borrelia turicatae (strain 91E135)
BRAHW Brachyspira hyodysenteriae (strain ATCC 49526 / WA1)
BRUAB Brucella abortus
BRUA2 Brucella abortus (strain 2308)
BRUA1 Brucella abortus (strain S19)
BRUC2 Brucella canis (strain ATCC 23365 / NCTC 10854)
BRUME Brucella melitensis
BRUMB Brucella melitensis biotype 2 (strain ATCC 23457)
BRUMC Brucella microti (strain CCM 4915)
BRUO2 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
BRUSU Brucella suis
BRUSI Brucella suis (strain ATCC 23445 / NCTC 10510)
BURCA Burkholderia cenocepacia (strain AU 1054)
BURCH Burkholderia cenocepacia (strain HI2424)
BURM1 Burkholderia multivorans (strain ATCC 17616 / 249)
BURPS Burkholderia pseudomallei (Pseudomonas pseudomallei)
BURP0 Burkholderia pseudomallei (strain 1106a)
BURP1 Burkholderia pseudomallei (strain 1710b)
BURP6 Burkholderia pseudomallei (strain 668)
CAMC1 Campylobacter concisus (strain 13826)
CAMC5 Campylobacter curvus (strain 525.92)
CAMFF Campylobacter fetus subsp. fetus (strain 82-40)
CAMJE Campylobacter jejuni
CAMJR Campylobacter jejuni (strain RM1221)
CAMJD Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)
CAMJJ Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
CAMJ8 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
CAMLR Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060)
CAPOD Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) (Bacteroides ochraceus)
CHLFF Chlamydophila felis (strain Fe/C-56)
CITK8 Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
CLOB6 Clostridium botulinum (strain 657 / Type Ba4)
CLOBA Clostridium botulinum (strain Alaska E43 / Type E3)
CLOB1 Clostridium botulinum (strain ATCC 19397 / Type A)
CLOBB Clostridium botulinum (strain Eklund 17B / Type B)
CLOBH Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
CLOBJ Clostridium botulinum (strain Kyoto / Type A2)
CLOBL Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)
CLOBM Clostridium botulinum (strain Loch Maree / Type A3)
CLOBK Clostridium botulinum (strain Okra / Type B1)
CLOD6 Clostridium difficile (strain 630)
CLODC Clostridium difficile (strain CD196)
CLODR Clostridium difficile (strain R20291)
CLOPE Clostridium perfringens
CLOP1 Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
CLOPS Clostridium perfringens (strain SM101 / Type A)
CLOTE Clostridium tetani
CORDI Corynebacterium diphtheriae
CORJK Corynebacterium jeikeium (strain K411)
CORK4 Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717)
CORU7 Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)
COXB2 Coxiella burnetii (strain CbuG_Q212) (Coxiella burnetii (strain Q212))
COXB1 Coxiella burnetii (strain CbuK_Q154) (Coxiella burnetii (strain Q154))
COXBN Coxiella burnetii (strain Dugway 5J108-111)
COXBR Coxiella burnetii (strain RSA 331 / Henzerling II)
CROTZ Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032)
CRYCD Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3)
DICNV Dichelobacter nodosus (strain VCS1703A)
EGGLE Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) (Eubacterium lentum)
EHRCR Ehrlichia chaffeensis (strain Arkansas)
EHRRG Ehrlichia ruminantium (strain Gardel)
EHRRW Ehrlichia ruminantium (strain Welgevonden)
ENTS8 Enterobacter sakazakii (strain ATCC BAA-894)
ENTFA Enterococcus faecalis (Streptococcus faecalis)
ECO55 Escherichia coli (strain 55989 / EAEC)
ECOUT Escherichia coli (strain UTI89 / UPEC)
ECO10 Escherichia coli O103:H2 (strain 12009 / EHEC)
ECO1A Escherichia coli O111:H- (strain 11128 / EHEC)
ECO27 Escherichia coli O127:H6 (strain E2348/69 / EPEC)
ECO24 Escherichia coli O139:H28 (strain E24377A / ETEC)
ECO57 Escherichia coli O157:H7
ECO5E Escherichia coli O157:H7 (strain EC4115 / EHEC)
ECO5T Escherichia coli O157:H7 (strain TW14359 / EHEC)
ECOLU Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
ECO26 Escherichia coli O26:H11 (strain 11368 / EHEC)
ECO45 Escherichia coli O45:K1 (strain S88 / ExPEC)
ECOL6 Escherichia coli O6
ECOL5 Escherichia coli O6:K15:H31 (strain 536 / UPEC)
ECO7I Escherichia coli O7:K1 (strain IAI39 / ExPEC)
ESCF3 Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
FINM2 Finegoldia magna (strain ATCC 29328) (Peptostreptococcus magnus)
FRAP2 Francisella philomiragia subsp. philomiragia (strain ATCC 25017)
FRATF Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA)
FRATH Francisella tularensis subsp. holarctica (strain LVS)
FRATN Francisella tularensis subsp. novicida (strain U112)
FRATT Francisella tularensis subsp. tularensis
FRAT1 Francisella tularensis subsp. tularensis (strain FSC 198)
FRATE Francisella tularensis subsp. tularensis (strain NE061598)
FUSNN Fusobacterium nucleatum subsp. nucleatum
GORB4 Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) (Rhodococcus bronchialis)
GRABC Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
HAEDU Haemophilus ducreyi
HAEIN Haemophilus influenzae
HAEI8 Haemophilus influenzae (strain 86-028NP)
HAEIE Haemophilus influenzae (strain PittEE)
HAEIG Haemophilus influenzae (strain PittGG)
HAEPS Haemophilus parasuis serovar 5 (strain SH0165)
HAES1 Haemophilus somnus (strain 129Pt) (Histophilus somni (strain 129Pt))
HELAH Helicobacter acinonychis (strain Sheeba)
HELHP Helicobacter hepaticus
HELPY Helicobacter pylori (Campylobacter pylori)
HELP1 Helicobacter pylori (strain 51)
HELP5 Helicobacter pylori (strain 52)
HELPB Helicobacter pylori (strain B38)
HELPG Helicobacter pylori (strain G27)
HELPH Helicobacter pylori (strain HPAG1)
HELP2 Helicobacter pylori (strain P12)
HELPS Helicobacter pylori (strain Shi470)
HELPJ Helicobacter pylori J99 (Campylobacter pylori J99)
KLEP7 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
KYTSD Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) (Micrococcus sedentarius)
LARHH Laribacter hongkongensis (strain HLHK9)
LEGPC Legionella pneumophila (strain Corby)
LEGPL Legionella pneumophila (strain Lens)
LEGPA Legionella pneumophila (strain Paris)
LEGPH Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
LEPBJ Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)
LEPBL Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)
LEPIN Leptospira interrogans
LEPIC Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni
LISMO Listeria monocytogenes
LISMH Listeria monocytogenes serotype 4a (strain HCC23)
LISMC Listeria monocytogenes serotype 4b (strain Clip81459)
LISMF Listeria monocytogenes serotype 4b (strain F2365)
MYCA9 Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
MYCA1 Mycobacterium avium (strain 104)
MYCBO Mycobacterium bovis
MYCBP Mycobacterium bovis (strain BCG / Pasteur 1173P2)
MYCBT Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)
MYCTU Mycobacterium tuberculosis
MYCTA Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
MYCTF Mycobacterium tuberculosis (strain F11)
MYCTK Mycobacterium tuberculosis (strain KZN 1435 / MDR)
MYCUA Mycobacterium ulcerans (strain Agy99)
MYCAP Mycoplasma agalactiae (strain PG2)
MYCCT Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)
MYCCR Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)
MYCGE Mycoplasma genitalium
MYCHP Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21)
MYCH2 Mycoplasma hyopneumoniae (strain 232)
MYCH7 Mycoplasma hyopneumoniae (strain 7448)
MYCMS Mycoplasma mycoides subsp. mycoides SC
MYCPE Mycoplasma penetrans
MYCPN Mycoplasma pneumoniae
MYCPU Mycoplasma pulmonis
NEIG1 Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
NEIG2 Neisseria gonorrhoeae (strain NCCP11945)
NEIMA Neisseria meningitidis serogroup A
NEIMB Neisseria meningitidis serogroup B
NEIM0 Neisseria meningitidis serogroup C (strain 053442)
NEIM8 Neisseria meningitidis serogroup C (strain 8013)
NEIMF Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
NEOSM Neorickettsia sennetsu (strain Miyayama)
NOCFA Nocardia farcinica
OCHA4 Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
ORITB Orientia tsutsugamushi (strain Boryong) (Rickettsia tsutsugamushi)
PASMU Pasteurella multocida
PHOAA Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))
PORGI Porphyromonas gingivalis (Bacteroides gingivalis)
PORG3 Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
PROAC Propionibacterium acnes
PROMH Proteus mirabilis (strain HI4320)
PSEAE Pseudomonas aeruginosa
PSEA8 Pseudomonas aeruginosa (strain LESB58)
PSEA7 Pseudomonas aeruginosa (strain PA7)
PSEAB Pseudomonas aeruginosa (strain UCBPP-PA14)
RALP1 Ralstonia pickettii (strain 12D)
RALPJ Ralstonia pickettii (strain 12J)
SACVD Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
SALAR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
SALCH Salmonella choleraesuis
SALEP Salmonella enteritidis PT4 (strain P125109)
SALPA Salmonella paratyphi A
SALPK Salmonella paratyphi A (strain AKU_12601)
SALPB Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
SALPC Salmonella paratyphi C (strain RKS4594)
SALSV Salmonella schwarzengrund (strain CVM19633)
SALTI Salmonella typhi
SALTY Salmonella typhimurium
SALT1 Salmonella typhimurium (strain 14028s / SGSC 2262)
SALTD Salmonella typhimurium (strain D23580)
SHIB3 Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
SHIBS Shigella boydii serotype 4 (strain Sb227)
SHIDS Shigella dysenteriae serotype 1 (strain Sd197)
SHIFL Shigella flexneri
SHIF8 Shigella flexneri serotype 5b (strain 8401)
SHIF2 Shigella flexneri serotype X (strain 2002017)
SHISS Shigella sonnei (strain Ss046)
STAAB Staphylococcus aureus (strain bovine RF122 / ET3-1)
STAAC Staphylococcus aureus (strain COL)
STAA2 Staphylococcus aureus (strain JH1)
STAA9 Staphylococcus aureus (strain JH9)
STAAR Staphylococcus aureus (strain MRSA252)
STAAS Staphylococcus aureus (strain MSSA476)
STAA1 Staphylococcus aureus (strain Mu3 / ATCC 700698)
STAAM Staphylococcus aureus (strain Mu50 / ATCC 700699)
STAAW Staphylococcus aureus (strain MW2)
STAAN Staphylococcus aureus (strain N315)
STAA8 Staphylococcus aureus (strain NCTC 8325)
STAAE Staphylococcus aureus (strain Newman)
STAA0 Staphylococcus aureus (strain TW20 / 0582)
STAAT Staphylococcus aureus (strain USA300 / TCH1516)
STAA3 Staphylococcus aureus (strain USA300)
STAES Staphylococcus epidermidis (strain ATCC 12228)
STAEQ Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
STAHJ Staphylococcus haemolyticus (strain JCSC1435)
STAS1 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
STRMK Stenotrophomonas maltophilia (strain K279a)
STRA1 Streptococcus agalactiae serotype Ia
STRA3 Streptococcus agalactiae serotype III
STRA5 Streptococcus agalactiae serotype V
STRDG Streptococcus dysgalactiae subsp. equisimilis (strain GGS_124)
STRE4 Streptococcus equi subsp. equi (strain 4047)
STREM Streptococcus equi subsp. zooepidemicus (strain MGCS10565)
STRGC Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)
STRMU Streptococcus mutans
STRMN Streptococcus mutans serotype c (strain NN2025)
STRPN Streptococcus pneumoniae
STRP7 Streptococcus pneumoniae (strain 70585)
STRPJ Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1)
STRR6 Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
STRPS Streptococcus pneumoniae (strain CGSP14)
STRPI Streptococcus pneumoniae (strain Hungary19A-6)
STRZJ Streptococcus pneumoniae (strain JJA)
STRZP Streptococcus pneumoniae (strain P1031)
STRZT Streptococcus pneumoniae (strain Taiwan19F-14)
STRP4 Streptococcus pneumoniae serotype 19F (strain G54)
STRP2 Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
STRP1 Streptococcus pyogenes serotype M1
STRPB Streptococcus pyogenes serotype M12 (strain MGAS2096)
STRPC Streptococcus pyogenes serotype M12 (strain MGAS9429)
STRP8 Streptococcus pyogenes serotype M18
STRPD Streptococcus pyogenes serotype M2 (strain MGAS10270)
STRPM Streptococcus pyogenes serotype M28
STRP3 Streptococcus pyogenes serotype M3
STRPF Streptococcus pyogenes serotype M4 (strain MGAS10750)
STRPZ Streptococcus pyogenes serotype M49 (strain NZ131)
STRPG Streptococcus pyogenes serotype M5 (strain Manfredo)
STRP6 Streptococcus pyogenes serotype M6
STRSV Streptococcus sanguinis (strain SK36)
STRSY Streptococcus suis (strain 05ZYH33)
STRS2 Streptococcus suis (strain 98HAH33)
STRS4 Streptococcus suis (strain BM407)
STRSE Streptococcus suis (strain P1/7)
STRSX Streptococcus suis (strain SC84)
STRU0 Streptococcus uberis (strain ATCC BAA-854 / 0140J)
TREDE Treponema denticola
TREPA Treponema pallidum
TREPS Treponema pallidum subsp. pallidum (strain SS14)
TROW8 Tropheryma whipplei (strain TW08/27) (Whipple's bacillus)
TROWT Tropheryma whipplei (strain Twist) (Whipple's bacillus)
UREPA Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
UREP2 Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736)
UREU1 Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western)
VIBCH Vibrio cholerae
VIBC3 Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
VIBCM Vibrio cholerae serotype O1 (strain M66-2)
VIBCJ Vibrio cholerae serotype O1 (strain MJ-1236)
VIBPA Vibrio parahaemolyticus
VIBVU Vibrio vulnificus
VIBVY Vibrio vulnificus (strain YJ016)
YERE8 Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
YERPE Yersinia pestis
YERPD Yersinia pestis (strain D106004)
YERP1 Yersinia pestis (strain D182038)
YERPP Yersinia pestis (strain Pestoides F)
YERPG Yersinia pestis bv. Antiqua (strain Angola)
YERPA Yersinia pestis bv. Antiqua (strain Antiqua)
YERPN Yersinia pestis bv. Antiqua (strain Nepal516)
YERPS Yersinia pseudotuberculosis
YERPB Yersinia pseudotuberculosis serotype IB (strain PB1/+)
YERP3 Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Host: Mammalia (facultative intracellular)
FRATO Francisella tularensis subsp. holarctica (strain OSU18)
FRATW Francisella tularensis subsp. tularensis (strain WY96-3418)
Host: Mammalia (intracellular obligate)
ANAMF Anaplasma marginale (strain Florida)
ANAMM Anaplasma marginale (strain St. Maries)
BURMA Burkholderia mallei (Pseudomonas mallei)
BURM9 Burkholderia mallei (strain NCTC 10229)
BURM7 Burkholderia mallei (strain NCTC 10247)
BURMS Burkholderia mallei (strain SAVP1)
CHLMU Chlamydia muridarum
CHLPN Chlamydia pneumoniae (Chlamydophila pneumoniae)
CHLTR Chlamydia trachomatis
CHLTA Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B)
CHLTJ Chlamydia trachomatis (strain B/Jali20/OT)
CHLTZ Chlamydia trachomatis (strain B/TZ1A828/OT)
CHLT2 Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B)
CHLTB Chlamydia trachomatis (strain L2b/UCH-1/proctitis)
CHLAB Chlamydophila abortus
CHLCV Chlamydophila caviae
CHLPP Chlamydophila pneumoniae (strain LPCoLN)
COXBU Coxiella burnetii
EHRCJ Ehrlichia canis (strain Jake)
MYCLE Mycobacterium leprae
MYCLB Mycobacterium leprae (strain Br4923)
NEORI Neorickettsia risticii (strain Illinois)
ORITI Orientia tsutsugamushi (strain Ikeda) (Rickettsia tsutsugamushi)
RICAE Rickettsia africae (strain ESF-5)
RICAH Rickettsia akari (strain Hartford)
RICB8 Rickettsia bellii (strain OSU 85-389)
RICCK Rickettsia canadensis (strain McKiel)
RICCN Rickettsia conorii
RICFE Rickettsia felis (Rickettsia azadi)
RICM5 Rickettsia massiliae (strain Mtu5)
RICPU Rickettsia peacockii (strain Rustic)
RICPR Rickettsia prowazekii
RICRO Rickettsia rickettsii (strain Iowa)
RICRS Rickettsia rickettsii (strain Sheila Smith)
RICTY Rickettsia typhi
Host: Mammalia and Insecta, Plant pathogen
BURCJ Burkholderia cepacia (strain J2315 / LMG 16656) (Burkholderia cenocepacia (strain J2315))
Host: Mollusca (Crassostrea gigas)
VIBSL Vibrio splendidus (strain LGP32) (Vibrio splendidus (strain Mel32))



Animal symbiont
Host: Axinella aff. mexicana (sponge)
CENSY Cenarchaeum symbiosum
Host: Calyptogena okutanii (clam)
VESOH Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)
Host: Euprymna scolopes (squid)
VIBF1 Vibrio fischeri (strain ATCC 700601 / ES114)
Host: Heterorhabditidae
PHOAA Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))
Host: Heterorhabditidae (nematodes)
PHOLL Photorhabdus luminescens subsp. laumondii
Host: Insecta
SULMW Sulcia muelleri (strain GWSS)
Host: fish and squid
VIBFM Vibrio fischeri (strain MJ11)
Host: psyllid
LIBAP Liberibacter asiaticus (strain psy62)
Host: termite gut
SEBTE Sebaldella termitidis (strain ATCC 33386 / NCTC 11300)



Archaeal commensal
THEPD Thermofilum pendens (strain Hrk 5)



Archaeal host for Naoarchaeum equitans
IGNH4 Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)



Archaeal pathogen
Host: Ignicoccus (obligate relationship)
NANEQ Nanoarchaeum equitans



Avirulent strain
ANACI Anaplasma centrale (strain Israel) (Anaplasma marginale subsp. centrale (strain Israel))
BURMS Burkholderia mallei (strain SAVP1)
COXBN Coxiella burnetii (strain Dugway 5J108-111)
FRATH Francisella tularensis subsp. holarctica (strain LVS)
HAEIN Haemophilus influenzae
HAES1 Haemophilus somnus (strain 129Pt) (Histophilus somni (strain 129Pt))
LISMH Listeria monocytogenes serotype 4a (strain HCC23)
MYCBP Mycobacterium bovis (strain BCG / Pasteur 1173P2)
MYCBT Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)
MYCTA Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
MYCHJ Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)
RICPU Rickettsia peacockii (strain Rustic)
RICRO Rickettsia rickettsii (strain Iowa)
SALTY Salmonella typhimurium
STRR6 Streptococcus pneumoniae (strain ATCC BAA-255 / R6)



Bacterial biocontrol
AGRRK Agrobacterium radiobacter (strain K84 / ATCC BAA-868)



Dinoflagellate pathogen
HAHCH Hahella chejuensis (strain KCTC 2396)



Dinoflagellate symbiont (obligate symbiont)
SILST Silicibacter sp. (strain TM1040)



Epibiont
Host: Alvinella pompejana (vent polychaete)
NAUPA Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)



Phototrophic consortium epibiont
CHLCH Chlorobium chlorochromatii (strain CaD3)



Plant commensal
BACA2 Bacillus amyloliquefaciens (strain FZB42)
ERWT9 Erwinia tasmaniensis (strain DSM 17950 / Et1/99)
PSEF5 Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
PSEFS Pseudomonas fluorescens (strain SBW25)



Plant endophyte
AZOSB Azoarcus sp. (strain BH72)
BURPP Burkholderia phytofirmans (strain DSM 17436 / PsJN)
ENT38 Enterobacter sp. (strain 638)
GLUDA Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
KLEP3 Klebsiella pneumoniae (strain 342)
METPB Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
PSEPW Pseudomonas putida (strain W619)
SERP5 Serratia proteamaculans (strain 568)
STRM5 Stenotrophomonas maltophilia (strain R551-3)



Plant endophyte?
DYAFD Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)



Plant pathogen
ACIAC Acidovorax avenae subsp. citrulli (strain AAC00-1)
AGRT5 Agrobacterium tumefaciens (strain C58 / ATCC 33970)
AYWBP Aster yellows witches'-broom phytoplasma (strain AYWB)
BURGB Burkholderia glumae (strain BGR1)
CLAM3 Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
CLAMS Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)
DICD5 Dickeya dadantii (strain Ech586)
DICDC Dickeya dadantii (strain Ech703)
DICZE Dickeya zeae (strain Ech1591)
ERWCT Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum)
LEIXX Leifsonia xyli subsp. xyli
LIBAP Liberibacter asiaticus (strain psy62)
ONYPE Onion yellows phytoplasma
PECCP Pectobacterium carotovorum subsp. carotovorum (strain PC1)
PHYAS Phytoplasma australiense
PHYMT Phytoplasma mali (strain AT)
PSEAB Pseudomonas aeruginosa (strain UCBPP-PA14)
PSE14 Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)
PSEU2 Pseudomonas syringae pv. syringae (strain B728a)
PSESM Pseudomonas syringae pv. tomato
RALSO Ralstonia solanacearum (Pseudomonas solanacearum)
STRSW Streptomyces scabies (strain 87.22) (Streptomyces scabiei)
XANAC Xanthomonas axonopodis pv. citri (Citrus canker)
XANCP Xanthomonas campestris pv. campestris
XANC8 Xanthomonas campestris pv. campestris (strain 8004)
XANCB Xanthomonas campestris pv. campestris (strain B100)
XANC5 Xanthomonas campestris pv. vesicatoria (strain 85-10)
XANOR Xanthomonas oryzae pv. oryzae
XANOM Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
XANOP Xanthomonas oryzae pv. oryzae (strain PXO99A)
XYLFA Xylella fastidiosa
XYLFM Xylella fastidiosa (strain M12)
XYLF2 Xylella fastidiosa (strain M23)
XYLFT Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Host: Vitis (grape)
AGRVS Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))



Plant saprophyte
BURA4 Burkholderia ambifaria (strain MC40-6)
BURVG Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia cepacia (strain R1808))
CELJU Cellvibrio japonicus (strain Ueda107)
CLOTH Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
CORGB Corynebacterium glutamicum (strain R)
FRAAA Frankia alni (strain ACN14a)
FRASN Frankia sp. (strain EAN1pec)
LACLK Lactococcus lactis subsp. lactis (strain KF147)
LISW6 Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
METNO Methylobacterium nodulans (strain ORS2060 / LMG 21967)
PSEPF Pseudomonas fluorescens (strain Pf0-1)
PSEPK Pseudomonas putida (strain KT2440)



Plant symbiont
AZOC5 Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
BRAJA Bradyrhizobium japonicum
BRASB Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
BRASO Bradyrhizobium sp. (strain ORS278)
BURP8 Burkholderia phymatum (strain DSM 17167 / STM815)
CUPTR Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424))
FRAAA Frankia alni (strain ACN14a)
FRASC Frankia sp. (strain CcI3)
FRASN Frankia sp. (strain EAN1pec)
METNO Methylobacterium nodulans (strain ORS2060 / LMG 21967)
METRJ Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
NOSP7 Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
PSEU5 Pseudomonas stutzeri (strain A1501)
RHIEC Rhizobium etli (strain CFN 42 / ATCC 51251)
RHIE6 Rhizobium etli (strain CIAT 652)
RHILS Rhizobium leguminosarum bv. trifolii (strain WSM1325)
RHILW Rhizobium leguminosarum bv. trifolii (strain WSM2304)
RHIL3 Rhizobium leguminosarum bv. viciae (strain 3841)
RHILO Rhizobium loti (Mesorhizobium loti)
RHIME Rhizobium meliloti (Sinorhizobium meliloti)
RHISN Rhizobium sp. (strain NGR234)
SINMW Sinorhizobium medicae (strain WSM419) (Ensifer medicae)



Protist endosymbiont
Host: Pseudotrichonympha grassii
AZOPC Azobacteroides pseudotrichonymphae genomovar. CFP2
Host: Trichonympha agilis
UNCTG Uncultured termite group 1 bacterium phylotype Rs-D17



Saprophyte
ACTMD Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)
BURTA Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
CLOB6 Clostridium botulinum (strain 657 / Type Ba4)
CLOBA Clostridium botulinum (strain Alaska E43 / Type E3)
CLOB1 Clostridium botulinum (strain ATCC 19397 / Type A)
CLOBB Clostridium botulinum (strain Eklund 17B / Type B)
CLOBH Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
CLOBJ Clostridium botulinum (strain Kyoto / Type A2)
CLOBL Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)
CLOBM Clostridium botulinum (strain Loch Maree / Type A3)
CLOBK Clostridium botulinum (strain Okra / Type B1)
LEPBA Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)
LEPBP Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)
NOCFA Nocardia farcinica
PAESJ Paenibacillus sp. (strain JDR-2)
STRMK Stenotrophomonas maltophilia (strain K279a)
THEFY Thermobifida fusca (strain YX)