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HAMAP families

The HAMAP families are a collection of orthologous microbial families manually created by expert curators. They are written in the UniRule format and contain data which is used to annotate bacterial, archaeal and plastid-encoded proteins in the UniProt/Swiss-Prot format [More details].

UniProtKB/Swiss-Prot Release 56.0 of 22-Jul-2008
UniProtKB/TrEMBL Release 39.0 of 22-Jul-2008

HAMAP families access
 e.g: MF_01200, zinc
The wildcard * is supported.

Sample family: MF_01808 (xerC)
 Browse:
Hamap tools
HAMAP-Scan - advanced scan:
Scan several sequences or a whole genome (all ORFs) against the HAMAP families, with partial or complete annotation in the UniProtKB/Swiss-Prot format.
Summary Statistics
Number of HAMAP families 1493
Number of alignments 1546
Number of profiles 1564
Coverage of UniProtKB/Swiss-Prot entries 204908
Number of families by taxonomic scopes
  • Archaea: 548
  • Bacteria: 1312
  • Plastid: 136
  • Archaea only: 180
  • Archaea+Bacteria: 323
  • Archaea+Bacteria+Plastid: 45
  • Bacteria only: 854
  • Bacteria+Plastid: 90
  • Plastid only: 1
Last modified 22-Jul-2008 by COL

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