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HAMAP: Salmonella paratyphi A complete proteome

General information

Species:  Salmonella paratyphi A
Species code: SALPA
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella (TaxID: 54388) [NEWT/ NCBI]
Description: Salmonella enterica serovar Paratyphi A is the second most prevalent cause of typhoid after S.enterica serovar Typhi. It is responsible for at least one third of cases in southern and eastern Asia. Paratyphi A causes a milder disease than Typhi but has been particularly virulent in some outbreaks. Typhi and Paratyphi A are members of different O antigen serogroups, D1 and A. The genome of Paratyphi A is smaller than the genomes of the two Typhi genomes, mainly because it has fewer prophages or other mobile elements. There are 173 peudogenes in Paratyphi A, usually caused by single-base mutations that lead to a frameshift or a stop codon.
Properties: Presence of flagella: Yes
Human pathogen: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of SALPA entries in the UniProt Knowledgebase: 4083 (929 in UniProtKB/Swiss-Prot + 3154 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 9150 / SARB42
Genome structure:
Chromosome EMBL accession number CP000026 (circular; 4,585,229 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=15531882; [ NCBI , EBI , Israel , Japan ]
McClelland M., Sanderson K.E., Clifton S.W., Latreille P., Porwollik S., Sabo A., Meyer R., Bieri T., Ozersky P., McLellan M., Harkins C.R., Wang C., Nguyen C., Berghoff A., Elliott G., Kohlberg S., Strong C., Du F., Carter J., Kremizki C., Layman D., Leonard S., Sun H., Fulton L., Nash W., Miner T., Minx P., Delehaunty K., Fronick C., Magrini V., Nhan M., Warren W., Florea L., Spieth J., Wilson R.K. ;
"Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid.";
Nat. Genet. 36:1268-1274(2004).
Web links:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Salmonella&GLspecies=enterica&GLstrain=ATCC9150
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid295319%5Borgn%5D
ERIC: http://www.ericbrc.org/portal/eric/salmonellaparatyphiaatcc9150
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Sent_PARATYPIA_ATCC9150
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Salmonella_paratyphi.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p13086_Sal_enter
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntse05
 EBI Proteome Analysis page



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