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| HAMAP: Photobacterium profundum (Photobacterium sp. (strain SS9)) complete proteome |
General information
Species: Photobacterium profundum (Photobacterium sp. (strain SS9))
| Species code: | PHOPR |
| Taxonomy: | Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium (TaxID: 74109) [NEWT/ NCBI] |
| Description: | This organism is a piezophile, that is it lives under high pressure, having been isolated at a depth of 2500 m. It grows over a broad (90 MPa) pressure range and is amenable to genetic manipulation. Like other Vibrionaceae it has 2 circular chromosomes and a 80 kb plasmid. It encodes two complete operons for F1F0 ATP synthase, one on each chromosome as well as three complete sets of cbb3 cytochrome oxidase genes; the one on chr. 2 was possibly acquired from an aproteobacterium, along with an unusual diheme cytochrome c gene. These findings support the idea that modified electron and proton transport are necessary for metabolic activity at high pressure. Confirmation that SS9 is a true piezophile comes from the observation that several stress-response genes are activated at atmospheric pressure (adapted from PubMed 15746425). |
| Properties: |
Presence of flagella:
Yes Human pathogen: No Interaction: No Number of membranes: 2 Number of inteins:0 |
| Statistics: | Number of PHOPR entries in the UniProt Knowledgebase: 5328 (595 in UniProtKB/Swiss-Prot + 4733 in UniProtKB/TrEMBL) |
Genome(s) sequenced
Strain: SS9
Tools
- Genome Proximity Viewer: This program displays the genes that are found in the genomic environment of a selected locus.
- Perform a BLAST search against all proteins from this proteome
- Download a file by FTP containing all UniProt Knowledgebase entries of this proteome
- Retrieve set of characterized or identified proteins for this proteome
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