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HAMAP: Helicobacter pylori (Campylobacter pylori) complete proteome

General information

Species:  Helicobacter pylori (Campylobacter pylori)
Species code: HELPY
Taxonomy: Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter (TaxID: 210) [NEWT/ NCBI]
Description: Micro-aerophilic, Gram-negative, slow-growing, spiral-shaped and flagellated organism. H.pylori is probably the most common cause of chronic bacterial infection of humans, present in almost half of the world population. The presence of the bacterium in the gastric mucosa is associated with chronic active gastritis and is implicated in more severe gastric diseases, including chronic atrophic gastritis, peptic ulceration and mucosa-associated lymphoid tissue lymphomas.
Properties: Presence of flagella: Yes
Human pathogen: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of HELPY entries in the UniProt Knowledgebase: 1553 (570 in UniProtKB/Swiss-Prot + 983 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 700392 / 26695
Genome structure:
Chromosome EMBL accession number AE000511 (circular; 1,667,867 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=97394467; PubMed=9252185; [ NCBI , EBI , Israel , Japan ]
Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C. ;
"The complete genome sequence of the gastric pathogen Helicobacter pylori.";
Nature 388:539-547(1997).
Web links:
CampyDB: http://xbase.bham.ac.uk/campydb/genome.pl?id=1106
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Helicobacter&GLspecies=pylori&GLstrain=26695
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid85962%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Hpyl_26695
HpyCyc: http://biocyc.org/HPY/organism-summary?object=HPY
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p233_Hel_pylor
PyloriGene: http://genolist.pasteur.fr/PyloriGene/genome.cgi
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ghp
 EBI Proteome Analysis page
 UniProtKB/Swiss-Prot document



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