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HAMAP: Agrobacterium tumefaciens (strain C58 / ATCC 33970) complete proteome

General information

Species:  Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Species code: AGRT5
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium (TaxID: 176299) [NEWT/ NCBI]
Description: Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. They invade the crown, roots and stems of a great variety of plants via wounds causing tumors. The diseases are crown gall, hairy root, and cane gall. Some strains possess a wide host range, whereas other possess a very limited host range. The tumor is correlated with the presence of a large tumor-inducing plasmid (Ti plasmid) in the bacteria. Thus A.tumefaciens causes crown gall on many dicotyledonous plants; A.rubi causes crown gall on raspberries; A.vitis gall formation on grapes; A.rhizogenes causes hairy roots; A.radiobacter is avirulent. However the ability to cause disease is associated with transmissible plasmids, and this grouping is easily disrupted when plasmids move from one strain to another. More recently Agrobacterium have been classified into 3 biovars based on physiological and biochemical phenotypes without consideration of disease; the 2 classification systems are not compatible. There is now a fully sequenced representative of each biovar publicly available.
Strain C58 is a representative of biovar I, which has also been extensively modified for biotechnological uses.
Properties: Presence of flagella: Yes
Interaction: Plant pathogen
Number of membranes: 2
Number of inteins:0
Statistics: Number of AGRT5 entries in the UniProt Knowledgebase: 5344 (613 in UniProtKB/Swiss-Prot + 4731 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    C58 / ATCC 33970
Genome structure:
• Chromosome circular EMBL accession number AE007869 (circular; 2,841,580 bp) (download entry) (download Genome Reviews).
• Chromosome linear EMBL accession number AE007870 (linear; 2,075,577 bp) (download entry) (download Genome Reviews).
• Plasmid AT EMBL accession number AE007872 (circular; 542,868 bp) (download entry) (download Genome Reviews).
• Plasmid Ti EMBL accession number AE007871 (circular; 214,233 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=21608551; PubMed=11743194; [ NCBI , EBI , Israel , Japan ]
Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B., Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K., Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C., Allinger M., Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C., Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S. ;
"Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.";
Science 294:2323-2328(2001).
[2] MEDLINE=21608550; PubMed=11743193; [ NCBI , EBI , Israel , Japan ]
Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K., Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y., Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P., Clendenning J., Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R., Li M.-J., McClelland E., Palmieri A., Raymond C., Rouse G., Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y., Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S., Hendrick C., Zhao Z.-Y., Dolan M., Chumley F., Tingey S.V., Tomb J.-F., Gordon M.P., Olson M.V., Nester E.W. ;
"The genome of the natural genetic engineer Agrobacterium tumefaciens C58.";
Science 294:2317-2323(2001).
Web links:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=283
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=283
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Atum_C58_CEREON
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Agrobacterium_tumefaciens.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p283_Agr_tumef
RhizoDB: http://xbase.bham.ac.uk/rhizodb/genome.pl?id=915 http://xbase.bham.ac.uk/rhizodb/genome.pl?id=916
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntat01
 EBI Proteome Analysis page



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