UniProtKB/Swiss-Prot Q15831: Variant p.Glu199Lys

Serine/threonine-protein kinase STK11
Gene: STK11
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Variant information Variant position:

199 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glutamate (E) to Lysine (K) at position 199 (E199K, p.Glu199Lys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and acidic (E) to large size and basic (K) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In colorectal cancer; somatic mutation; impaired kinase activity. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs121913317 [ dbSNP | Ensembl ]

Sequence information Variant position:

199 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

433 The length of the canonical sequence.
Location on the sequence:

PGNLLLTTGGTLKISDLGVA E ALHPFAADDTCRTSQGSPAF The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PGNLLLTTGGTLKISDLGVAEALHPFAADDTCRTSQGSPAF

Mouse                         PGNLLLTTNGTLKISDLGVAEALHPFAVDDTCRTSQGSPAF

Rat                           PGNLLLTTNGTLKISDLGVAEALHPFAVDDTCRTSQGSPAF

Chicken                       PGNLLLTTNGTLKISDLGVAEALHPFAEDDTCRTSQGSPAF

Xenopus laevis                PGNLLLTTDGTLKISDLGVAEALHPFAEGDTCRTSQGSPAF

Slime mold                    PDNILFTHANVLKLSDFGVAEDSSQLEDFECLSRSYGSPAF

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 430	Serine/threonine-protein kinase STK11
Domain	49 – 309	Protein kinase
Modified residue	189 – 189	Phosphothreonine; by autocatalysis
Mutagenesis	189 – 189	T -> A. Reduced phosphorylation.
Mutagenesis	194 – 194	D -> A. Loss of kinase activity.
Mutagenesis	204 – 204	F -> A. No effect. Impaired formation of a heterotrimeric complex with STRADA and CAB39; when associated with A-74.

Literature citations
Frequent somatic mutations in serine/threonine kinase 11/Peutz-Jeghers syndrome gene in left-sided colon cancer.
Dong S.M.; Kim K.M.; Kim S.Y.; Shin M.S.; Na E.Y.; Lee S.H.; Park W.S.; Yoo N.J.; Jang J.J.; Yoon C.Y.; Kim J.W.; Kim S.Y.; Yang Y.M.; Kim S.H.; Kim C.S.; Lee J.Y.;
Cancer Res. 58:3787-3790(1998)
Cited for: VARIANTS COLORECTAL CANCER SER-171; LYS-199; ASN-208; ASP-215; LEU-354 AND MET-367;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.