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Life Science Directory

(formerly known as Amos' WWW links page)

Notes:

1) The URL for this page is http://www.expasy.org/links.html
, but remember that we reserve the right to choose the links we want to include !

3) Links to protein sequence, 3D structure and 2D-gel analytical tools are provided on ExPASy's Proteomics tools page.

Quick jump to the following topics:

Protein db | 3D structure db | 2D-PAGE & MS db | DNA/RNA db | Carbohydrates db | Species specific db | Human mutation db | Genes/proteins specific db | PTM db | Phylogenetics db | Gene expression db | Patents | References | Dict., protocols & nomenclat. | Biol. soft. & db catalogs | Gateways | Biol. journals & publishers | Biol. societies | Biocomputing servers | Biotech. companies | Bioinformatics companies | Misc. medical ref. sites | Misc. scientific ref. sites

Protein related databases
UniProt - the universal protein resource UniProt Knowledgebase - consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated) PMD - Protein Mutant db InterPro - Integrated Resources of Proteins Domains and Functional Sites PROSITE - Database of protein families and domains BLOCKS - BLOCKS db Gene3D - Structural and Functional Annotation of Protein Families Panther - Functional classification system Pfam - Protein families db (HMM derived) [Mirrors at JFRC (USA), CCBB (South Korea) Institute, UK, Karolinska Institutet (Sweden)] PIRSF - Protein classification system PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) PROTOMAP - An automatic hierarchical classification of UniProtKB/Swiss-Prot and UniProtKB/TrEMBL proteins SBASE - SBASE domain db SMART - Simple Modular Architecture Research Tool Superfamily - Library of profile HMMs representing all proteins of known structure STRING - Search Tool for the Retrieval of Interacting Genes/Proteins TIGRFAMs - TIGR protein families db BIND - Biomolecular Interaction Network Database DIP - Database of Interacting Proteins MINT - Molecular INTeraction database HPRD - Human Protein Reference Database IntAct BioGRID - General Repository for Interaction Dataset PPI - JCB Protein-Protein Interaction Website
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Protein related databases

UniProt - the universal protein resource
UniProt Knowledgebase - consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated)
PMD - Protein Mutant db
InterPro - Integrated Resources of Proteins Domains and Functional Sites
PROSITE - Database of protein families and domains
BLOCKS - BLOCKS db
Gene3D - Structural and Functional Annotation of Protein Families
Panther - Functional classification system
Pfam - Protein families db (HMM derived) [Mirrors at JFRC (USA), CCBB (South Korea) Institute, UK, Karolinska Institutet (Sweden)]
PIRSF - Protein classification system
PRINTS - Protein Motif fingerprint db
ProDom - Protein domain db (Automatically generated)
PROTOMAP - An automatic hierarchical classification of UniProtKB/Swiss-Prot and UniProtKB/TrEMBL proteins
SBASE - SBASE domain db
SMART - Simple Modular Architecture Research Tool
Superfamily - Library of profile HMMs representing all proteins of known structure
STRING - Search Tool for the Retrieval of Interacting Genes/Proteins
TIGRFAMs - TIGR protein families db
BIND - Biomolecular Interaction Network Database
DIP - Database of Interacting Proteins
MINT - Molecular INTeraction database
HPRD - Human Protein Reference Database
IntAct
BioGRID - General Repository for Interaction Dataset
PPI - JCB Protein-Protein Interaction Website

Protein 3D structure related databases
PDB - Protein Data Bank BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [Mirror at USA \| Israel \| Singapore \| Australia] HCA - Hydrophobic Cluster Database Molecules To Go - Molecules To Go (formerly known as Molecules R Us), browser for PDB BMM Domain Fishing - Biomolecular Modelling Laboratory (ICRF) protein domain fishing Relibase - Receptor/ligand complexes db [Mirror in USA] TOPS - Protein topology atlas CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD)) HSSP - Homology-derived secondary structure of proteins db MutaProt - Comparison of PDB files which differ by point mutations DisProt - Database of Protein Disorder SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules BioImage - Biological image db (contains imaging data on macromolecules)
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Protein 3D structure related databases

PDB - Protein Data Bank
BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy
SWISS-MODEL Repository - Automatically generated protein models db
ModBase - Db of comparative protein structure models
CATH - UCL BSM structural classification of proteins
SCOP - Structural classification of proteins [Mirror at USA | Israel | Singapore | Australia]
HCA - Hydrophobic Cluster Database
Molecules To Go - Molecules To Go (formerly known as Molecules R Us), browser for PDB
BMM Domain Fishing - Biomolecular Modelling Laboratory (ICRF) protein domain fishing
Relibase - Receptor/ligand complexes db [Mirror in USA]
TOPS - Protein topology atlas
CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD))
HSSP - Homology-derived secondary structure of proteins db
MutaProt - Comparison of PDB files which differ by point mutations
DisProt - Database of Protein Disorder
SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules
BioImage - Biological image db (contains imaging data on macromolecules)

Proteomics databases and links
Gel-based data
MIAPEGelDB - A public repository for MIAPE Gel electrophoresis documents WORLD-2DPAGE List - Links to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services World-2DPAGE Repository - A public standards-compliant repository for gel-based proteomics data published in the literature The World-2DPAGE Constellation - Promote and publish gel-based proteomics data through the ExPASy server Proteomics Links page of the Swiss Proteomics Society
Mass spectrometry data
GPMdb - Global Proteome Machine Database OPD - Open Proteomics Database PeptideAtlas - peptides identified in tandem mass spectrometry proteomics experiments PRIDE - PRoteomics IDEntifications database Tranche - Peer-to-peer distributed file system
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Nucleotide and related databases
EMBL - EMBL Nucleotide sequence db (EBI) Genbank - GenBank Nucleotide Sequence db (NCBI) DDBJ - DNA Data Bank of Japan dbEST - dbEST (Expressed Sequence Tags) db (NCBI) dbSTS - dbSTS (Sequence Tagged Sites) db (NCBI) AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA sequences db Codon Usage Db EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] ISIS - Intron Sequence and Information System RDP - Ribosomal db Project gRNAs db - Guide RNA db (currently not working) PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db smiRNAdb - Information about mammalian small RNAs ssu rRNA - Small ribosomal subunit at the European ribosomal RNA database lsu rRNA - Large ribosomal subunit at the European ribosomal RNA database 5S rRNA - 5S ribosomal RNA db greengenes - 16S rRNA gene database and workbench tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of Bayreuth uRNA db RNA editing - RNA editing site RNAmod db - RNA modification db TelDB - Multimedia Telomere Resource MPDB - Molecular probe db VectorDB - Vector sequence db
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Nucleotide and related databases

EMBL - EMBL Nucleotide sequence db (EBI)
Genbank - GenBank Nucleotide Sequence db (NCBI)
DDBJ - DNA Data Bank of Japan
dbEST - dbEST (Expressed Sequence Tags) db (NCBI)
dbSTS - dbSTS (Sequence Tagged Sites) db (NCBI)
AsDb - Aberrant Splicing db
ACUTS - Ancient conserved untranslated DNA sequences db
Codon Usage Db
EPD - Eukaryotic Promoter db
HOVERGEN - Homologous Vertebrate Genes db
IMGT - ImMunoGeneTics db [Mirror at EBI]
ISIS - Intron Sequence and Information System
RDP - Ribosomal db Project
gRNAs db - Guide RNA db (currently not working)
PLACE - Plant cis-acting regulatory DNA elements db
PlantCARE - Plant cis-acting regulatory DNA elements db
smiRNAdb - Information about mammalian small RNAs
ssu rRNA - Small ribosomal subunit at the European ribosomal RNA database
lsu rRNA - Large ribosomal subunit at the European ribosomal RNA database
5S rRNA - 5S ribosomal RNA db
greengenes - 16S rRNA gene database and workbench
tmRNA Website
tmRDB - tmRNA dB
tRNA - tRNA compilation from the University of Bayreuth
uRNA db
RNA editing - RNA editing site
RNAmod db - RNA modification db
TelDB - Multimedia Telomere Resource
MPDB - Molecular probe db
VectorDB - Vector sequence db

Carbohydrates resources
FCCA - Forum Carbohydrates Coming of Age GlycoSuiteDB - Db of glycan structures Monosacharide browser - Space filling Fischer projection for monosaccharides Thorkild's lectin page - Gateway to lectins
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Species specific databases:
Human
OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneClinics - Medical genetics knowledge base GDB - Genome Data Base GeneCards - Db integrating information on human genes GeneLoc - Integrated map of the human genome (ex- UDB) Ensembl Human genome browser UCSC human genome working draft TIGR HGI - TIGR Human Gene Index Hs UniGene - Human transcripts in GenBank (EST clusters) STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs) Allgenes.org - Human predicted gene index/catalog GenLink - Human genetics resource GeneLynx - Portal to the human genome HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...) HUNT - Human Novel Transcripts CGAP - Cancer Genome Anatomy Project MGC - Mammalian Gene Collection SCDb - Stem cell db Homophila - Human Disease to Drosophila gene db Human Protein Atlas - Displays the expression and localization of proteins in a large variety of normal human tissues and cancer cells Chr1 at Rutgers - Human chromosome 1 at Rutgers Chr1 at Sanger - Sanger Center chromosome 1 project Chr1 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 1 Chr2 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 2 Chr 3 at DDBJ Chr3 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 3 Chr4 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 4 Chr5 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 5 Chr6 at Sanger - Sanger Center chromosome 6 project Chr6 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 6 Chr7 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 7 Chr8 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 8 Chr9 at Sanger - Sanger Center chromosome 1 project Chr9 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 9 Chr9 - Human chromosome 9 db Chr10 at Sanger - Sanger Center chromosome 10 project Chr10 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 10 Chr11 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 11 Chr12 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 12 Chr13 at Sanger - Sanger Center chromosome 13 project Chr13 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 13 Chr14 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 14 Chr15 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 15 Chr16 TIGR - Human chromosome 16 db at TIGR Chr16 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 16 Chr17 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 17 Chr18 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 18 Chr18 - Human chromosome 18 at Boston Children's Hospital Chr19 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 19 Chr20 at Sanger - Sanger Center chromosome 20 project Chr20 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 20 Chr21 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 21 Chr22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22 Chr22 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 22 ChrX at Sanger - Sanger Center chromosome 1 project ChrX Swiss-Prot list - Links to Swiss-Prot entries from human chromosome X ChrY Swiss-Prot list - Links to Swiss-Prot entries from human chromosome Y H-InvDB Database - Human gene db, with cDNA clones available from six high throughput cDNA sequencing projects Human Chromosome1 Launchpad Human Chromosome2 Launchpad Human Chromosome3 Launchpad Human Chromosome4 Launchpad Human Chromosome5 Launchpad Human Chromosome6 Launchpad Human Chromosome7 Launchpad Human Chromosome8 Launchpad Human Chromosome9 Launchpad Human Chromosome10 Launchpad Human Chromosome11 Launchpad Human Chromosome12 Launchpad Human Chromosome13 Launchpad Human Chromosome14 Launchpad Human Chromosome15 Launchpad Human Chromosome16 Launchpad Human Chromosome17 Launchpad Human Chromosome18 Launchpad Human Chromosome19 Launchpad Human Chromosome20 Launchpad Human Chromosome21 Launchpad Human Chromosome22 Launchpad Human ChromosomeX Launchpad Human ChromosomeY Launchpad
Vertebrates
OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes MGD) Ensembl Mouse genome browser TIGR MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST clusters) MGC - Mammalian Gene Collection Mouse gene knockouts db RGD - Rat genome db RatMAP - Rat genome db TIGR RGI - TIGR Rat Gene Index Rn Unigene - Rat transcripts in GenBank (EST clusters) BOVMAP - Bovine genome db (in France) DGP - Dog Genome Project ArkDB - Cat, Chicken, Cow, Deer, Horse, Pig, Quail, Sheep, Turkey genome databases FishBase - Global information system on fishes Fugu genome project Fugu - HGMP Resource Centre Fugu Project (Fugu rubripes) Ensembl Fugu genome browser Medakafish - Mekada fish (Oryzias latipes) server ArkDB - Sea Bass, Salmon genome databases ZFIN - Zebrafish Information Network Ensembl Zebrafish genome browser
Mitochondrion and chloroplast
GOBASE - Organelle Genome Database MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear gen C.caldarium - Cyanidium caldarium strain RK1 chloroplast genome
Insects
Drosophila Swiss-Prot list - Links to Drosophila Swiss-Prot entries FlyBase - Drosophila genetic and molecular db BDGP - Berkeley Drosophila Genome Project FlyView - Drosophila image db Homophila - Human Disease to Drosophila gene db Mosquito Genomics AnoDB - Anopheles gambiae db Ensembl Mosquito genome browser
Invertebrates
WormBase - C.elegans db [Mirror at Sanger] C.elegans WWW server - at University of Texas Southwestern C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins NEXTDB - The Nematode Expression Pattern DataBase C.elegans Swiss-Prot list - Links to C.elegans Swiss-Prot entries WormPep - C.elegans proteins db WorfDB - C. elegans ORFeome cloning project DictyBase - Dictyostelium discoideum db DictyDb - Dictyostelium discoideum db Dictyostelium Genome Sequencing project at BCM Cone shells Web site Parasite genomes db and resources PlasmoDB - P.falciparum genome db Malaria - WHO - Malaria db (from WHO) P.falciparum Sanger - P.falciparum genome project at Sanger PFDB - Plasmodium falciparum Genome db P.falciparum - Plasmodium falciparum Gene Sequence Tag project Malaria parasite metabolic pathways Giardia lamblia genome project LGN - Leishmania Genome Network ToxoDB - Toxoplasma gondii genome project Trypanosoma brucei genome project Trypanosoma cruzi genome project kDNA - Kinetoplast Minicircle Sequence db
Plants
NAL - AGIS - Access to many plant genome databases at the National Agricultural Library Mendel - Plant gene nomenclature database from CPGN FLAGdb++ - Integrative database around plant genomes Arabidopsis Swiss-Prot list - Links to A.thaliana WWW sites and to Swiss-Prot entries TAIR - The Arabidopsis Information Resource MATDB - MIPS Arabidopsis thaliana db TIGR At - TIGR Arabidopsis thaliana db AMPL - Arabidopsis Membrane Protein Library Arabidopsis at PlaCe - Site with info on P450, glucosyltransferases, etc. Gramene - A comparative mapping resource for grains RGP - Rice Genome Research Program Oryzabase - Japanese rice genome db Rice genome project at Wisconsin Rice-research.org - Monsanto rice genome site TIGR OsGI - TIGR Rice Genome project BeanGenes - Beans genome db ChlamyDB - Chlamydomonas reinhardtii genome db CoffeeDNA - Coffee genomics web site CottonDB - Cotton genome db MaizeDb - Maize genome db Pisum sativum (pea) web site (in russian) TIGR Potato - TIGR Potato Functional Genomics project TIGR GmGI - TIGR Soybean Gene Index Snapdragon (A.majus) web site DragonDB - Snapdragon Database SorghumDB - Sorghum genome db SoyBase - Soybean genome db SoyBase metabolic db - Metabolic subset of the soybean genome db TIGR LeGI - TIGR Tomato Gene Index Dendrome - Forest trees genome db
Fungi
FGSC - Fungal Genetics Stock Center Genomic Exploration of the Hemiascomycete Yeasts FGI - Fungal genome initiative at the Broad Institute Fungal genome databases at MIPS Fungal genomes at the Sanger Institute FGR - Fungal Genome Resource Yeast Swiss-Prot list - Links to S.cerevisiae WWW sites and to Swiss-Prot entries CYGD - MIPS Comprehensive Yeast Genome db SGD - Saccharomyces genome db Yeast snoRNA - Yeast small nucleolar RNAs db YTPdb - Yeast Transport Protein db YMPL - Yeast Membrane Protein Library Mitochondrial Proteome db YEASTGFP - Yeast GFP Fusion Localization db TRIPLES - TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces YRC - Yeast Resource Center PROPHECY - PROfiling of PHEnotypic Characteristics in Yeast SCMD - Saccharomyces Cerevisiae Morphological db GPofYPF - Global Profiling of Yeast Protein Function Saccharomyces Genomes - Finding functional features in Saccharomyces Genomes by phylogenetic footprinting Yeast Comparative Genomics S.pombe Swiss-Prot list - Links to S.pombe WWW sites and to Swiss-Prot entries GeneDB S.Pombe - Schizosaccharomyces pombe GeneDB S.pombe genome project Forsburg lab pombe pages AGD - Ashbya genome db Aspergillus nidulans db Aspergillus fumigatus Genome db Aspergillus web site C. albicans Swiss-Prot list - Links to C.albicans WWW sites and to Swiss-Prot entries CGD - Candida Genome db C. albicans Swiss-Prot list - Links to C.albicans WWW sites and to Swiss-Prot entries CGD - Candida Genome db CGD - Candida Genome db C. albicans physical map - Candida albicans server at the Univ. of Minnesota Candida albicans pages - Candida albicans at the NRC/BRI C.albicans genome annotation - Agabian Lab Web db CandidaDB - Candida albicans genome db Cryptococcus neoformans Genome Project Cryptococcus neoformans db - Candida Genome db CunicuList - Encephalitozoon cuniculi Genome db FGDB - Fusarium graminearum Genome db MNCDB - MIPS Neurospora crassa db Neurospora crassa db NGP - Neurospora crassa genome project at New Mexico Neurospora crassa Gene List MUMDB - MIPS Ustilago maydis db PC - Pneumocystis carinii genome project Phycomyces Web site - Resource site for scientists working on Phycomyces
Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature List of complete bacterial proteomes in Swiss-Prot (HAMAP) CBS - CBS Genome Atlas Database CMR - TIGR Comprehensive Microbial Ressource GIB - Genome information broker for Microbial genomes GeneQuiz GOLD Genomes On-line Database HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen BPGD - Bacterial polysaccharide gene db Bacterial quorum sensing MicrobeWorld - Educational site on microbes E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries EcoWeb / EcoGene - Very comprehensive E.coli db ECCE - E.coli Cell Envelope Protein Data Collection ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism EchoBASE GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Institute ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ Regulon DB B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db DBTBS - Db of B.subtilis promoters and transcription factors A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute BbDB - TIGR Borrelia burgdorferi genome db B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db Chromobacterium violaceum C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute E.ruminantium - Ehrlichia ruminantium (formerly Cowdria ruminantium) genome project at Sanger Institute DrDB - TIGR Deinococcus radiodurans strain R1 genome db H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries HiDB - Haemophilus influenzae genome db at TIGR H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries HpDB - Helicobacter pylori strain 26695 genome db at TIGR PyloriGene - Helicobacter pylori genomic db L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db L.plantarum - Lactobacillus plantarum genome project ListiList - Listeria monocytogenes and Listeria innocua genome db M.bovis - Mycobacterium bovis strain AF2122/97 genome project Leproma - Mycobacterium leprae strain TN genome db M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute M.tuberculosis structural genomics consortium M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries MgDB - Mycoplasma genitalium genome db at TIGR M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries M.pneumoniae - Mycoplasma pneumoniae genome project MypuList - Mycoplasma pulmonis genome db Mycoplasma synoviae genome db N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project N.europaea - Nitrosomonas europaea genome project P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome project R.solanacearum - Ralstonia solanacearum genome project Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.palustris - Rhodopseudomonas palustris genome project RicBase - Rickettsia conorii strain Malish 7 genome project R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries RhizoBase - Sinorhizobium loti genome project S.meliloti - Sinorhizobium meliloti genome project S.aureus - Staphylococcus aureus strain NCTC 8325 genome project S.mutans - Streptococcus mutans strain UAB159 genome project S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute S.suis - Streptococcus suis genome project at Sanger Institute S.uberis - Streptococcus uberis genome project at Sanger Institute S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries CyanoBase - Synechocystis PCC 6803 db TmDB - Thermotoga maritima genome db at TIGR TpDB - Treponema pallidum genome db at TIGR T.whipplei - Tropheryma whipplei genome project at Sanger Institute U.urealyticum - Ureaplasma urealyticum genome WWW site VcDB - Vibrio cholerae genome db at TIGR X.fastidiosa - Xylella fastidiosa genome WWW site Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute
Archaea
List of complete archaeal proteomes in Swiss-Prot (HAMAP) A.pernix - Aeropyrum pernix K1 genome db AfDB - Archaeoglobus fulgidus genome db at TIGR Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries MjDB - Methanococcus jannaschii genome db at TIGR Pyrococcus abyssi genome and re-annotation db T.volcanium - Thermoplasma volcanium genome project
Viruses and phages
All the virology on the WWW - links to virology WWW servers by David M. Sander ICTVdB - Universal virus taxonomy db ViralZone - Portal to viral UniProtKB/Swiss-Prot entries Adenoviruses web site HCVDB - Hepatitis C virus db HIV - HIV and related species db HPV - Human papillomaviruses db Picornavirus - Picornavirus home page and access to db VirOligo- virus-specific oligonucleotides database PhageBase Bacteriophage ecology group GOLD - Genomes On-line db DOGS - Database of genome sizes
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Human mutation databases/resources
HGMD - Human Gene Mutation db SVD - EBI Sequence variation db HGVbase GeneDis - Human genetic disease db The SNP consortium dbSNP - Human single nucleotide polymorphism (SNP) db ALFRED - Allele Frequency Db SeattleSNPs - UW-FHCRC Variation Discovery Resource PicSNP - Catalog of non-synonymous SNP List of mutation databases from OMIM List of mutation databases from IMT (Finland) ADAbase - Human adenosine deaminase (ADA) mutation db ADB - Albinism db (Mutations in human genes causing albinism) Albumin Web site AR mutations - Human androgen receptor mutation db Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies BLMbase - Human BLM mutation db (Bloom syndrome) BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) CC_Mut_db The Congenital Cataract Mutation Database CD3Ebase - Human CD3E mutation db CD3Gbase - Human CD3G mutation db CD40Lbase - Human CD40 ligand mutation db CD3Gbase - Human CD3G mutation db CD40Lbase - Human CD40 ligand mutation db CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collagen mutation db Connexin-deafness - Human connexins mutation db CFTR mutation - Human cystic fibrosis mutation db (CFTR) KMbloodDB - Blood disease genes db KMbrainDB - Brain disease genes db KMcancerDB - Cancer disease genes db KMearDB - Ear disease genes db KMeyeDB - Eye disease genes db KMheartDB - Heart disease genes db KMmuscleDB - Muscle disease genes db KMsyndromeDB MaiDB (autoimmune) FVII mutation - Human Factor VII mutation db Haemophilia B mutation db- Factor IX G6PD - Human G6PD deficiency resource G6PDdb - Human G6PD mutation db GNAS1 - Human GNAS1 mutation db HbVar - Hemoglobin variants db Hereditary hearing loss homepage LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LHR - Human luteinizing hormone (LH) receptor mutation db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db OCRL1 - OCRL1 mutation db (Lowe Syndrome) OTCase - Human ornithine transcarbamylase (OTCase) website Cytochrome P450 alleles nomenclature IARC TP53 mutation db - International Agency for Research on Cancer Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH) mutation db PAX2 mutation - Human PAX2 mutation db PAX6 mutation - Human PAX6 mutation db Prion - Prion and prion disease web site RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated protein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases Alsod.org - ALS/SOD1 genetic mutations db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WRN - Human WRN mutation db (Warner disease) X-ALD mutation - Human ABCD1 mutation db
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Human mutation databases/resources

HGMD - Human Gene Mutation db
SVD - EBI Sequence variation db
HGVbase
GeneDis - Human genetic disease db
The SNP consortium
dbSNP - Human single nucleotide polymorphism (SNP) db
ALFRED - Allele Frequency Db
SeattleSNPs - UW-FHCRC Variation Discovery Resource
PicSNP - Catalog of non-synonymous SNP
List of mutation databases from OMIM
List of mutation databases from IMT (Finland)
ADAbase - Human adenosine deaminase (ADA) mutation db
ADB - Albinism db (Mutations in human genes causing albinism)
Albumin Web site
AR mutations - Human androgen receptor mutation db
Antithrombin mutation db
Asthma and Allergy gene db
BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies
BLMbase - Human BLM mutation db (Bloom syndrome)
BTKbase - Human BTK mutation db (X-linked agammaglobulinemia)
CC_Mut_db The Congenital Cataract Mutation Database
CD3Ebase - Human CD3E mutation db
CD3Gbase - Human CD3G mutation db
CD40Lbase - Human CD40 ligand mutation db
CD3Gbase - Human CD3G mutation db
CD40Lbase - Human CD40 ligand mutation db
CD40Lbase - Human CD40 ligand mutation db
COL1/3 mutation - Human Type I and III collagen mutation db
Connexin-deafness - Human connexins mutation db
CFTR mutation - Human cystic fibrosis mutation db (CFTR)
KMbloodDB - Blood disease genes db
KMbrainDB - Brain disease genes db
KMcancerDB - Cancer disease genes db
KMearDB - Ear disease genes db
KMeyeDB - Eye disease genes db
KMheartDB - Heart disease genes db
KMmuscleDB - Muscle disease genes db
KMsyndromeDB
MaiDB (autoimmune)
FVII mutation - Human Factor VII mutation db
Haemophilia B mutation db- Factor IX
G6PD - Human G6PD deficiency resource
G6PDdb - Human G6PD mutation db
GNAS1 - Human GNAS1 mutation db
HbVar - Hemoglobin variants db
Hereditary hearing loss homepage
LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia)
LHR - Human luteinizing hormone (LH) receptor mutation db
NCF1base - Human NCF1 mutation db
NCF2base - Human NCF2 mutation db
Neuromuscular diseases web site
NCL - Neuronal Ceroid Lipofuscinoses mutation db
OCRL1 - OCRL1 mutation db (Lowe Syndrome)
OTCase - Human ornithine transcarbamylase (OTCase) website
Cytochrome P450 alleles nomenclature
IARC TP53 mutation db - International Agency for Research on Cancer
Germline p53 mutation db - University of Prague db of germline p53 mutations
PAHdb - Human phenylalanine hydroxylase (PAH) mutation db
PAX2 mutation - Human PAX2 mutation db
PAX6 mutation - Human PAX6 mutation db
Prion - Prion and prion disease web site
RAG1base - Human RAG1 mutation db
RAG2base - Human RAG2 mutation db
RB1base - Human retinoblastoma-associated protein (RB) mutation db
RetNet - Retinal Information Network
Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases
Alsod.org - ALS/SOD1 genetic mutations db
TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2)
TGDB - Tumor gene db
VMD2 mutation - Human VMD2 mutation db
vWF mutation - Human von Willebrand factor (vWF) mutation db
WRN - Human WRN mutation db (Warner disease)
X-ALD mutation - Human ABCD1 mutation db

Gene(s)/protein(s) specific databases/resources
Human ABC transporters ABCISSE - ABC systems : Information on Sequence Structure and Evolution ADAMTS - Apte lab ADAMTS and ADAMTSL resource Human albumin Web site Allergens in Swiss-Prot - Nomenclature and index of allergens in Swiss-Prot Allergen sequence db Allergome - A db of allergenic molecules SDAP - Structural database of allergenic proteins Alginate genes - Pseudomomonas alginate production genes Aminoacyl-tRNA synthetases in Swiss-Prot - List of aminoacyl-tRNA synthetases in Swiss-Prot AARSDB - Aminoacyl-tRNA synthetases AARSDB - Aminoacyl-tRNA synthetases db from P.Dessen Androgen Receptor Gene Mutations Database AMSDb - Antimicrobial sequences db Antibody resource page - Links to antibody related Web resources AraC-XylS - AraC/xylS transcriptional regulator family db TFII - Basal transcription factors Blood group antigens in Swiss-Prot BRENDA - Db of enzyme functional data EF-hand CaBP - EF-hand calcium-binding proteins db CAZy - Carbohydrate-Active enZYmes Web site CBS domain - Cystathionine Beta Synthase domain WWW page CD antigens in Swiss-Prot - Nomenclature for surface proteins of human leucocytes (CD) Chaperonin - Information on GroEL and GroES chaperonins cpnDB - A Chaperonin Database CSDBase - Cold shock domain db COPE - Cytokines On-line Pathfinder Encyclopedia dbCFC - Cytokine family cDNA db R&D Systems' Cytokine mini reviews DExH/D protein family db DnaB helicase DPInteract - DNA-Proteins interactions db EMP - Enzymes and Metabolic Pathways db ENZYME - Enzymes nomenclature db Worthington enzyme manual EpoDB - Erythropoiesis gene expression db (Epo GED) ESTHER - Esterases and alpha/beta hydrolase enzymes Estrogen Receptor Resource Expansins web site Modules - Extracellular proteins modules (domains) FADPNR - FAD-dependent pyridine nucleotide oxidoreductases Flavodoxins FYVE finger domain Globin - Globin gene server Glucocorticoid Receptor Resource Glycosyl hydrolases in Swiss-Prot - Nomenclature and index of glycosyl hydrolases in Swiss-Prot 7TM in Swiss-Prot - List of G protein coupled receptors in Swiss-Prot GPCRDB - G protein-coupled receptor db (7TM) at EMBL GRR - Glucocorticoid receptor resource Arabidopsis Glucosyltransferases Web site GnRH - Gonadotropin-releasing hormones (GnRH) family Histone - Histones db HIVdb - HIV protease db HORDE - Human Olfactory Receptor Data Exploratorium Hox proteins in Swiss-Prot - Vertebrate homeotic Hox proteins: nomenclature and index of Swiss-Prot entries IMGT - ImMunoGeneTics db [Mirror at EBI] InBase - Inteins db from the New England Biolabs Integrins Initiation factors in Swiss-Prot - List and index of translation initiation factors in Swiss-Prot KEGG - Kyoto Encyclopedia of Genes and Genomes Klotho - Biochemical compounds declarative db LGIC - Ligand Gated Ion Channel subunit db LED - Lipase Engineering Database MDB - Metalloprotein Site Database and Browser Mitochondrial carriers pages from Nelson's lab Mutator - Transposases, Mutator family MutS - MutS family Neurotrophic factors NPD - Nuclear Protein db NucleaRDB - Federated db on nuclear receptors P450 pages from Nelson's lab P450 - Directory of P450-containing systems Arabidopsis P450 Web site IARC p53 db - IARC db of somatic p53 mutations PDE - Phosphodiesterases Plant Peroxidases Peptidases in Swiss-Prot - Nomenclature and index of peptidases in Swiss-Prot MEROPS - Peptidase db PLACE - Plant cis-acting regulatory DNA elements db KinBase PKR - Protein Kinase Resource PatBase - P-type ATPase db PPAR - Peroxisome Proliferator-Activated Receptor resource Proteoglycans Phytochromes - Computer analysis of phytochrome sequences PUMA2 - Evolutionary Analysis of Metabolism Reactome - a curated knowledgebase of biological pathways RecA - RecA protein REBASE - Restriction enzymes and methylases db Restriction enzymes/methylases in Swiss-Prot - List of restriction enzymes and methylases in Swiss-Prot Ribosomal proteins in Swiss-Prot - Families and index of ribosomal proteins in Swiss-Prot RNase P - Ribonuclease P db SABIO Reaction Kinetics Database SPAD - Signaling pathway db SRPDB - Signal Recognition Particle db SNF2 - SNF2 family TRANSFAC - Transcription factors db TRANSPATH - Signal Transduction Browser TC-DB - Transport Classification System from Milton Saier VDR - Vitamin D Nuclear Receptor WD-repeat - WD-repeat proteins family Wnt gene homepage WormPep - C.elegans proteins db YTPdb - Yeast Transport Protein db Conotoxins - Information on conotoxins from a Web site on cone shells International venom and toxin db Scorpion - Scorpion toxin db Snake - Snake toxin db
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Gene(s)/protein(s) specific databases/resources

Human ABC transporters
ABCISSE - ABC systems : Information on Sequence Structure and Evolution
ADAMTS - Apte lab ADAMTS and ADAMTSL resource
Human albumin Web site
Allergens in Swiss-Prot - Nomenclature and index of allergens in Swiss-Prot
Allergen sequence db
Allergome - A db of allergenic molecules
SDAP - Structural database of allergenic proteins
Alginate genes - Pseudomomonas alginate production genes
Aminoacyl-tRNA synthetases in Swiss-Prot - List of aminoacyl-tRNA synthetases in Swiss-Prot
AARSDB - Aminoacyl-tRNA synthetases
AARSDB - Aminoacyl-tRNA synthetases db from P.Dessen
Androgen Receptor Gene Mutations Database
AMSDb - Antimicrobial sequences db
Antibody resource page - Links to antibody related Web resources
AraC-XylS - AraC/xylS transcriptional regulator family db
TFII - Basal transcription factors
Blood group antigens in Swiss-Prot
BRENDA - Db of enzyme functional data
EF-hand CaBP - EF-hand calcium-binding proteins db
CAZy - Carbohydrate-Active enZYmes Web site
CBS domain - Cystathionine Beta Synthase domain WWW page
CD antigens in Swiss-Prot - Nomenclature for surface proteins of human leucocytes (CD)
Chaperonin - Information on GroEL and GroES chaperonins
cpnDB - A Chaperonin Database
CSDBase - Cold shock domain db
COPE - Cytokines On-line Pathfinder Encyclopedia
dbCFC - Cytokine family cDNA db
R&D Systems' Cytokine mini reviews
DExH/D protein family db
DnaB helicase
DPInteract - DNA-Proteins interactions db
EMP - Enzymes and Metabolic Pathways db
ENZYME - Enzymes nomenclature db
Worthington enzyme manual
EpoDB - Erythropoiesis gene expression db (Epo GED)
ESTHER - Esterases and alpha/beta hydrolase enzymes
Estrogen Receptor Resource
Expansins web site
Modules - Extracellular proteins modules (domains)
FADPNR - FAD-dependent pyridine nucleotide oxidoreductases
Flavodoxins
FYVE finger domain
Globin - Globin gene server
Glucocorticoid Receptor Resource
Glycosyl hydrolases in Swiss-Prot - Nomenclature and index of glycosyl hydrolases in Swiss-Prot
7TM in Swiss-Prot - List of G protein coupled receptors in Swiss-Prot
GPCRDB - G protein-coupled receptor db (7TM) at EMBL
GRR - Glucocorticoid receptor resource
Arabidopsis Glucosyltransferases Web site
GnRH - Gonadotropin-releasing hormones (GnRH) family
Histone - Histones db
HIVdb - HIV protease db
HORDE - Human Olfactory Receptor Data Exploratorium
Hox proteins in Swiss-Prot - Vertebrate homeotic Hox proteins: nomenclature and index of Swiss-Prot entries
IMGT - ImMunoGeneTics db [Mirror at EBI]
InBase - Inteins db from the New England Biolabs
Integrins
Initiation factors in Swiss-Prot - List and index of translation initiation factors in Swiss-Prot
KEGG - Kyoto Encyclopedia of Genes and Genomes
Klotho - Biochemical compounds declarative db
LGIC - Ligand Gated Ion Channel subunit db
LED - Lipase Engineering Database
MDB - Metalloprotein Site Database and Browser
Mitochondrial carriers pages from Nelson's lab
Mutator - Transposases, Mutator family
MutS - MutS family
Neurotrophic factors
NPD - Nuclear Protein db
NucleaRDB - Federated db on nuclear receptors
P450 pages from Nelson's lab
P450 - Directory of P450-containing systems
Arabidopsis P450 Web site
IARC p53 db - IARC db of somatic p53 mutations
PDE - Phosphodiesterases
Plant Peroxidases
Peptidases in Swiss-Prot - Nomenclature and index of peptidases in Swiss-Prot
MEROPS - Peptidase db
PLACE - Plant cis-acting regulatory DNA elements db
KinBase
PKR - Protein Kinase Resource
PatBase - P-type ATPase db
PPAR - Peroxisome Proliferator-Activated Receptor resource
Proteoglycans
Phytochromes - Computer analysis of phytochrome sequences
PUMA2 - Evolutionary Analysis of Metabolism
Reactome - a curated knowledgebase of biological pathways
RecA - RecA protein
REBASE - Restriction enzymes and methylases db
Restriction enzymes/methylases in Swiss-Prot - List of restriction enzymes and methylases in Swiss-Prot
Ribosomal proteins in Swiss-Prot - Families and index of ribosomal proteins in Swiss-Prot
RNase P - Ribonuclease P db
SABIO Reaction Kinetics Database
SPAD - Signaling pathway db
SRPDB - Signal Recognition Particle db
SNF2 - SNF2 family
TRANSFAC - Transcription factors db
TRANSPATH - Signal Transduction Browser
TC-DB - Transport Classification System from Milton Saier
VDR - Vitamin D Nuclear Receptor
WD-repeat - WD-repeat proteins family
Wnt gene homepage
WormPep - C.elegans proteins db
YTPdb - Yeast Transport Protein db
Conotoxins - Information on conotoxins from a Web site on cone shells
International venom and toxin db
Scorpion - Scorpion toxin db
Snake - Snake toxin db

Post-translational modifications databases and resources
DSDBASE - Disulfide database (derived from 3D data) GlycoSuiteDB - Db of glycan structures LIPID MAPS - LIPID Metabolites And Pathways Strategy GlycateBase - Database of glycation data for epsilon amino groups of lysines O-GlycBase - O-glycosylated proteins db PhosphoBase - Phosphorylation sites db Phosphorylation site db - Bacterial and archaeal phosphorylation sites resource PhosphoSite - Db of phosphorylation sites in human and mouse proteomes DOLOP Db of bacterial lipoproteins UbiProt - Db of ubiquitylated proteins RESID - Db of Amino Acid Modifications Delta Mass - Db of mass of Post-Translational Modifications
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Post-translational modifications databases and resources

DSDBASE - Disulfide database (derived from 3D data)
GlycoSuiteDB - Db of glycan structures
LIPID MAPS - LIPID Metabolites And Pathways Strategy
GlycateBase - Database of glycation data for epsilon amino groups of lysines
O-GlycBase - O-glycosylated proteins db
PhosphoBase - Phosphorylation sites db
Phosphorylation site db - Bacterial and archaeal phosphorylation sites resource
PhosphoSite - Db of phosphorylation sites in human and mouse proteomes
DOLOP Db of bacterial lipoproteins
UbiProt - Db of ubiquitylated proteins
RESID - Db of Amino Acid Modifications
Delta Mass - Db of mass of Post-Translational Modifications

Phylogenetics and taxonomy databases & resources
COG and KOG - Phylogenetic classification of proteins encoded in complete genomes eggNog - Automated construction and annotation of orthologous groups of genes EGO - Eukaryotic Gene Orthologs Ensembl Compara - Genome-wide species comparisons HOGENOM - Homologous Sequences in Complete Genomes Database HOVERGEN - Homologous Vetebrate Genes Database InParanoid - Eukaryotic ortholog groups KO - KEGG Orthology: Metazome - Phylogenomic analysis of metazoan gene families Optic - Orthologous and paralogous transcripts in clades OMA - Orthologs Matrix Project (OMA) OrthoDB Hierarchical catalog of eukaryotic orthologs OrthoMCL DB Ortholog grouping for protein sequences from multiple genomes PhylomeDB - Database for phylomes (collections of phylogenetic trees for all proteins encoded in a given genome) P-POD - Princeton Protein Orthology Database with an emphasis on providing information about disease-related genes Protein Clusters - NCBI collection of related protein sequences (clusters) PhyloFacts - Pre-calculated structural and phylogenomic analyses of protein families and domains TreeFam - Tree families database of phylogenetic trees of animal genes CluSTr - Automatic classification of UniProtKB proteins into groups of related proteins HomoloGene - Automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes ProtoNet - Classification of the proteins into hierarchical clusters NCBI Taxonomy Browser NEWT - UniProt Taxonomy Browser The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms TreeBASE - Relational db of phylogenetic information
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Phylogenetics and taxonomy databases & resources

COG and KOG - Phylogenetic classification of proteins encoded in complete genomes
eggNog - Automated construction and annotation of orthologous groups of genes
EGO - Eukaryotic Gene Orthologs
Ensembl Compara - Genome-wide species comparisons
HOGENOM - Homologous Sequences in Complete Genomes Database
HOVERGEN - Homologous Vetebrate Genes Database
InParanoid - Eukaryotic ortholog groups
KO - KEGG Orthology:
Metazome - Phylogenomic analysis of metazoan gene families
Optic - Orthologous and paralogous transcripts in clades
OMA - Orthologs Matrix Project (OMA)
OrthoDB Hierarchical catalog of eukaryotic orthologs
OrthoMCL DB Ortholog grouping for protein sequences from multiple genomes
PhylomeDB - Database for phylomes (collections of phylogenetic trees for all proteins encoded in a given genome)
P-POD - Princeton Protein Orthology Database with an emphasis on providing information about disease-related genes
Protein Clusters - NCBI collection of related protein sequences (clusters)
PhyloFacts - Pre-calculated structural and phylogenomic analyses of protein families and domains
TreeFam - Tree families database of phylogenetic trees of animal genes

CluSTr - Automatic classification of UniProtKB proteins into groups of related proteins
HomoloGene - Automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes
ProtoNet - Classification of the proteins into hierarchical clusters

NCBI Taxonomy Browser
NEWT - UniProt Taxonomy Browser
The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms
TreeBASE - Relational db of phylogenetic information

Gene expression databases and resources
4DXpress - a database for cross-species expression pattern comparisons ArrayExpress - MicroArray informatics at the EBI Bgee - Retrieve and compare gene expression patterns across species CleanEx - database of gene expression profiles ExpressDB - Yeast and E.coli RNA expression db GeneX - An open source Gene Expression database GEO - Gene Expression Omnibus RAD - RNA abundance db SMD - Stanford microarray db MILANO - Microarray Literature-based Annotation Genevestigator - a multi-organism, novel type of online meta-analysis tool for gene expression
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Gene expression databases and resources

4DXpress - a database for cross-species expression pattern comparisons
ArrayExpress - MicroArray informatics at the EBI
Bgee - Retrieve and compare gene expression patterns across species
CleanEx - database of gene expression profiles
ExpressDB - Yeast and E.coli RNA expression db
GeneX - An open source Gene Expression database
GEO - Gene Expression Omnibus
RAD - RNA abundance db
SMD - Stanford microarray db

MILANO - Microarray Literature-based Annotation
Genevestigator - a multi-organism, novel type of online meta-analysis tool for gene expression

Patents databases
DPD - DNA Patent db USDA Agricultural Biotechnology Intellectual Property FindThatPatent FreePatentsOnline Germany Patent database - with full-text and one-click patent search Japanese Patents and Inventions USPTO patent db - USA Patent and Trademark Office patent db Esp@cenet - Patent information database from the European Patent Office (worldwide coverage) Freepatentsonline - access to millions of patents WikiPatents - the largest database of patents open for public comment on the internet
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Patents databases

DPD - DNA Patent db
USDA Agricultural Biotechnology Intellectual Property
FindThatPatent
FreePatentsOnline
Germany Patent database - with full-text and one-click patent search
Japanese Patents and Inventions
USPTO patent db - USA Patent and Trademark Office patent db
Esp@cenet - Patent information database from the European Patent Office (worldwide coverage)
Freepatentsonline - access to millions of patents
WikiPatents - the largest database of patents open for public comment on the internet

References (bibliographic databases)
PubMed Medline server AGRICOLA - AGRICultural OnLine Access; ref. db from NAL Article@INIST - Scientific and Technical Information Institute articles and monographs db Korean Journals Abstract db SeqAnalRef - Sequence analysis bibliographic references
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Dictionaries, protocols, courses, nomenclature, etc.
BioABACUS - Biotechnology ABbreviation and ACronym Uncovering Service Biology Reference BioTech's life science dictionary DCB - Dictionary of cell biology by Julian Dow AAnP - IUPAC-IUBMB nomenclature for amino acids and peptides Amino acids 2 - Another information page on amino acids (from Berlin Free Univ.) Delta Mass - Db of mass of Post-Translational Modifications Carbohydrates - IUPAC-IUBMB nomenclature for carbohydrates Genetic code Viewer - Genetic code viewer at EBI Glossary of Biochemistry and Molecular Biology - by David M. Glick Primer on molecular genetics - from the US Department of Energy Ion Source - Mass spectrometry resource Sequence similarity searches primer - from Keith Robison / Harvard Pedestrian guide to analysing sequence databases - from Burkhard Rost and Reinard Schneider Weight matrices for sequence similarity scoring - from David Wheeler / MBCR Biocomputing courses resource list - Syllabi for a variety of courses and tutorials on Bioinformatics (from VSNS BCD) Quick Guides - EMBnet Quick guides BioComputing Hypertext Coursebook - from VSNS BCD BioActivity - Protein sequence and structure analysis: a practical guide Homology modelling course - from the EMBL Cold Spring Harbor Protocols Molecular Biology Protocols Molecular biology protocols - from MBS (Molecular Biology Shortcuts) Abbreviations of chemical compounds List of nomenclature related references for proteins - from Swiss-Prot GO - Gene Ontology Consortium WWW site HUGO nomenclature committee JCBN - IUPAC-IUB Joint commission on Biochemical Nomenclature (JCBN) Nobel Foundation Website The Nobel prize Internet Archive NCBI Taxonomy List of Bacterial Names with Standing in Nomenclature ISIS - International Species Information System Species 2000 - Project to provide in an electronic form the names and taxonomy of all known species
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Dictionaries, protocols, courses, nomenclature, etc.

BioABACUS - Biotechnology ABbreviation and ACronym Uncovering Service
Biology Reference
BioTech's life science dictionary
DCB - Dictionary of cell biology by Julian Dow
AAnP - IUPAC-IUBMB nomenclature for amino acids and peptides
Amino acids 2 - Another information page on amino acids (from Berlin Free Univ.)
Delta Mass - Db of mass of Post-Translational Modifications
Carbohydrates - IUPAC-IUBMB nomenclature for carbohydrates
Genetic code Viewer - Genetic code viewer at EBI
Glossary of Biochemistry and Molecular Biology - by David M. Glick
Primer on molecular genetics - from the US Department of Energy
Ion Source - Mass spectrometry resource
Sequence similarity searches primer - from Keith Robison / Harvard
Pedestrian guide to analysing sequence databases - from Burkhard Rost and Reinard Schneider
Weight matrices for sequence similarity scoring - from David Wheeler / MBCR
Biocomputing courses resource list - Syllabi for a variety of courses and tutorials on Bioinformatics (from VSNS BCD)
Quick Guides - EMBnet Quick guides
BioComputing Hypertext Coursebook - from VSNS BCD
BioActivity - Protein sequence and structure analysis: a practical guide
Homology modelling course - from the EMBL
Cold Spring Harbor Protocols
Molecular Biology Protocols
Molecular biology protocols - from MBS (Molecular Biology Shortcuts)
Abbreviations of chemical compounds
List of nomenclature related references for proteins - from Swiss-Prot
GO - Gene Ontology Consortium WWW site
HUGO nomenclature committee
JCBN - IUPAC-IUB Joint commission on Biochemical Nomenclature (JCBN)
Nobel Foundation Website
The Nobel prize Internet Archive
NCBI Taxonomy
List of Bacterial Names with Standing in Nomenclature
ISIS - International Species Information System
Species 2000 - Project to provide in an electronic form the names and taxonomy of all known species

Biological software and databases catalog servers
CLC Free Workbench - A desktop program including a number of algorithms for DNA, RNA, and protein analyses. Available for Linux, MacOS X and Windows CLC Protein Workbench - A desktop program including a number of advanced algorithms for protein sequence analysis. Available for Linux, MacOS X and Windows BioCatalog - The BioCatalog at EBI LIC Generator - A web-based software for Ligation Independent Cloning vector and primer design Quantum Pharmaceuticals - Drug Discovery and Computational Chemistry Software Software library from Genamics.com
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Biological software and databases catalog servers

CLC Free Workbench - A desktop program including a number of algorithms for DNA, RNA, and protein analyses. Available for Linux, MacOS X and Windows
CLC Protein Workbench - A desktop program including a number of advanced algorithms for protein sequence analysis. Available for Linux, MacOS X and Windows
BioCatalog - The BioCatalog at EBI
LIC Generator - A web-based software for Ligation Independent Cloning vector and primer design
Quantum Pharmaceuticals - Drug Discovery and Computational Chemistry Software
Software library from Genamics.com

Gateways (portals) to Life Science resources
Art's Biotechnology Resource Antibody Directory - A comprehensive portal for antibodies with a broad collection of research antibodies available world over Biofind - Biotechnology industry information, gossip and news Bioinformatik.de - Web directory for bioinformatics BioNetbook - Institut Pasteur gateway to biosites Bioplanet - The bioinformatics homepage BIOPPS - Science & Technology Biocluster de Mexico BSL - BioScience links from Russia Biotaq.com BioTech BioView - Site for Biopharmaceutical jobs, news, information and resources DATAbiotech - A portal dedicated to the biotech and pharmaceutical world. Enzyme Directory - An exclusive portal for Enzymes, Substrates, Inhibitors and Recombinant proteins. ExactAntigen.com - a curated database of antibody products Genomics Directory Biosyn Gizmo - bundle of databases (siRNA, protein, peptide antigen) and tools HAGR - The Human Aging Genomic Resources Highveld.com - Internet Directory of Biology and Biotechnology Ion Channel Media Group LabAction - Biology video sharing site LabVelocity - Resource for biotechnology and life science Microbiologyprocedure.com - Providing information on Microbiology basics, techniques, procedures, methods, applications and diseases Molecular Biology Gateway from Horizon Press Molecular Station - Molecular Biology Protocols and Bioinformatics Network Science Peptide Guide PharmaOpportunities - Pharmaceutical Jobs from Pharmaopportunities Protein Web - Everything Protein, from 20 Essential Amino Acids to Whey protein Vs Soya protein Proteomics Research ReNaBI - French bioinformatics platforms network SIPHS - Question & Answer System for Life Sciences Researchers StrainInfo.net - Navigating microbial space Swiss Life Sciences database The Peptide Resource Page - your complet guide to peptide research and suppliers The Genomics Center
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Gateways (portals) to Life Science resources

Art's Biotechnology Resource
Antibody Directory - A comprehensive portal for antibodies with a broad collection of research antibodies available world over
Biofind - Biotechnology industry information, gossip and news
Bioinformatik.de - Web directory for bioinformatics
BioNetbook - Institut Pasteur gateway to biosites
Bioplanet - The bioinformatics homepage
BIOPPS - Science & Technology Biocluster de Mexico
BSL - BioScience links from Russia
Biotaq.com
BioTech
BioView - Site for Biopharmaceutical jobs, news, information and resources
DATAbiotech - A portal dedicated to the biotech and pharmaceutical world.
Enzyme Directory - An exclusive portal for Enzymes, Substrates, Inhibitors and Recombinant proteins.
ExactAntigen.com - a curated database of antibody products
Genomics Directory
Biosyn Gizmo - bundle of databases (siRNA, protein, peptide antigen) and tools
HAGR - The Human Aging Genomic Resources
Highveld.com - Internet Directory of Biology and Biotechnology
Ion Channel Media Group
LabAction - Biology video sharing site
LabVelocity - Resource for biotechnology and life science
Microbiologyprocedure.com - Providing information on Microbiology basics, techniques, procedures, methods, applications and diseases
Molecular Biology Gateway from Horizon Press
Molecular Station - Molecular Biology Protocols and Bioinformatics
Network Science
Peptide Guide
PharmaOpportunities - Pharmaceutical Jobs from Pharmaopportunities
Protein Web - Everything Protein, from 20 Essential Amino Acids to Whey protein Vs Soya protein
Proteomics Research
ReNaBI - French bioinformatics platforms network
SIPHS - Question & Answer System for Life Sciences Researchers
StrainInfo.net - Navigating microbial space
Swiss Life Sciences database
The Peptide Resource Page - your complet guide to peptide research and suppliers
The Genomics Center

Biological journals and publishers
Resources linking to journals home pages
Swiss-Prot journals list - Provides direct links to most biological journals home pages PubList.com - Internet Directory of Publications e-journals.org - Electronic journals directory Medical Journal Online - List of journals from the University of Texas Research Medical Library Journal index from Genamics.com Journal index from Horizon Scientific Press HUM-MOLGEN - HUM-MOLGEN communication forum home page for journals TOC Highwire Press links to top Science Journals Medline full text lists - List of journals in Medline with Web sites ISSN - International Standard Serial Number organization
Publishers
Allen Press, Inc. AMA - American Medical Association publications ACS - American Chemistry Society publications AP - Academic Press Alaken - Alaken, Inc. ASM - American Society of Microbiology publications Annual Reviews Arnold Publishers BioMed Central - The Open Access Publisher Bio-IT World - Technology for the Life Sciences BioScientifica Ltd Birkhauser Verlag Basel Blackwell Science BMJ - British Medical Journal publishing group Cell Press Churchill Livingstone COB - Company of Biologists Ltd CRC Press, Inc. CSHL - Cold Spring Harbor Laboratory Press CSIRO - CSIRO Publishing CUP - Cambridge University Press CJP - Carden Jennings Publishing Co. Ltd Marcel Dekker, Inc. Elsevier Science FASEB publications G+B - Gordon and Breach Publishing Group HighWire Press Horizon Scientific Press Humana Press, Inc. IOS Press IR - Inter-Research Science Publisher Futura Publishing Company Karger AG Editrice Kurtis JL - John Libbey Eurotext LW&W - Lippincott Williams and Wilkins Martin Dunitz Publishers Mary Ann Liebert Masson Mosby Munksgaard IAPC NAUKA - NAUKA International Academic Publishing Company (Russia) NRC Research Press OUP - Oxford University Press Parthenon Publishing Group Pharmaceutical Press Portland Press Pulsus Group Inc. Rockfeller University Press Sage Science Press SGM - Society for General Microbiology publications SIR - SIR Publishing Slack, Inc. Springer T&F - Taylor & Francis Ltd [Mirror in the U.K.] Thieme University of Chicago Press Urban and Fischer Verlag VSP - VSP International Science Publishers VZN - Verlag der Zeitschrift fur Naturforschung W de G - Walter de Gruyter and Co. WBS - W.B. Saunders Co. Wiley - John Wiley and Sons [Mirror in the U.K.] Wiley-VCH
Bioinformatics journals and newsletters
Bioinformatics Briefings in Bioinformatics ISB - In Silico Biology BioInformer - EBI's newsletter embnet.news - EMBnet's newsletter NCBI Newsletter PDB Quaterly Newsletter B6 - Bulletin d'information du Service d'Informatique Scientifique (Pasteur Institute / FR) BioInform - Global Bioinformatics new service BITS - Bioinformatics Information Technology and Systems
Genomic newsletters
Human Genome Project Information FGN - Fungal Genetics Newsletter Rice Genome Newsletter WBG - Worm Breeder's Gazette
Miscellaneous
IJC - Internet Journal of Chemistry Plant Gene Register
Biotechnology trade journals
BioCentury Biotech Industry Supplier Registry BioWorld Online Drug Discovery and Development GEN - Genetic Engineering News
General science journals
Nature New Scientist La Recherche Science Scientific American The Scientist ScienceDaily Magazine Science News Online CNN Sci-Tech - CNN Science and Technology
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Some biological societies and organizations
APS - American Peptide Society ASCB - The American Society for Cell Biology ASHG - American Society of Human Genetics ATCC - American Type Culture Collection Biochemical Society BSA - Botanical Society of America CSBMCB - Canadian Society of Biochemistry and Molecular and Cell Biology EFBF - European Federation of Biophysics EGF - European Genetics Foundation EMBO - European Molecular Biology Organization ESEB - European Society for Evolutionary Biology ESHG - European Society of Human Genetics FAOBMB - Federation of Asian and Oceanian Biochemists and Molecular Biologists FASEB - Federation of American Societies for Experimental Biology FEBS - Federation of European Biochemistry Societies HUGO - HUman Genome Organization HUPO - HUman Proteome Organization IUBMB - International Union of Biochemistry and Molecular Biology IUPAC - International Union of Pure and Applied Chemistry MSA - Mycological Society of America PPI - Plasma Proteome Institute PRF - Protein Research Foundation SDB - Society for Developmental Biology SGM - Society for General Microbiology SICB - Society for Integrative and Comparative Biology DOI - Digital Object Identifier foundation BioJava Project - International association of developers of Java tools for bioinformatics Bioperl Project - International association of developers of Perl tools for bioinformatics Biopython Project - International association of developers of Python tools for bioinformatics ISCB - International Society for Computational Biology OMG LSR - Object Management Group Life Science Research task force
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Some biological societies and organizations

APS - American Peptide Society
ASCB - The American Society for Cell Biology
ASHG - American Society of Human Genetics
ATCC - American Type Culture Collection
Biochemical Society
BSA - Botanical Society of America
CSBMCB - Canadian Society of Biochemistry and Molecular and Cell Biology
EFBF - European Federation of Biophysics
EGF - European Genetics Foundation
EMBO - European Molecular Biology Organization
ESEB - European Society for Evolutionary Biology
ESHG - European Society of Human Genetics
FAOBMB - Federation of Asian and Oceanian Biochemists and Molecular Biologists
FASEB - Federation of American Societies for Experimental Biology
FEBS - Federation of European Biochemistry Societies
HUGO - HUman Genome Organization
HUPO - HUman Proteome Organization
IUBMB - International Union of Biochemistry and Molecular Biology
IUPAC - International Union of Pure and Applied Chemistry
MSA - Mycological Society of America
PPI - Plasma Proteome Institute
PRF - Protein Research Foundation
SDB - Society for Developmental Biology
SGM - Society for General Microbiology
SICB - Society for Integrative and Comparative Biology
DOI - Digital Object Identifier foundation
BioJava Project - International association of developers of Java tools for bioinformatics
Bioperl Project - International association of developers of Perl tools for bioinformatics
Biopython Project - International association of developers of Python tools for bioinformatics
ISCB - International Society for Computational Biology
OMG LSR - Object Management Group Life Science Research task force

Biocomputing servers homepages
Europe
EBI - European Bioinformatics Institute EMBnet - European Molecular Biology Network EMBL - EMBL Biocomputing unit SIB - Swiss Institute of Bioinformatics EMBnet CH - Switzerland EMBnet node ISREC - ISREC bioinformatics group (Lausanne / Swizerland) CBRG - Computational Biochemistry Research Group (Zurich / Switzerland) INFOBIOGEN - GIS INFOBIOGEN; France EMBnet node ABIM - Atelier BioInformatique (Marseille / FR) B3E - Bioinformatique/Biostatistique/Biomathematique/Epidemiologie (Paris / FR) Genethon - Genethon (Evry / FR) GeneStream - Institut de Génétique Humaine (Montpellier / FR) GENOSCOPE - Centre National de Séquencage (Evry / FR) GenoStar - Consortium for the development of a bioinformatic platform IGS - Information Génétique et Structurale (Structural and Genetic Information Laboratory) (Marseille / FR) IMPBIO - Informatique, Mathématiques, Physique en Biologie moléculaire Pasteur - Institut Pasteur (Paris / FR) PBIL - Pole Bio-informatique Lyonnais (Lyon / FR) EGOISt -Master professionnel de BioInforMatique de l'Université de Rouen Sanger - Sanger Centre (Hinxton / U.K.) BMM - Biomolecular Modelling laboratory at ICRF (London / U.K.) BSM - Biomolecular Structure and Modelling group at UCL (London / U.K.) Manchester - Manchester University Bioinformatics unit (U.K.) RIO - Roslin Institute Online (U.K.) GeniusNet - DKFZ Biocomputing Service Group; Germany EMBnet node GSF AG BIODV - Software Development for Molecular Biology at the GSF Institut fuer Sauegetiergenetik GSC - Genome Sequencing Center (Iena / Germany) MDC:Bioinf - Department of Bionformatic of the Max Delbruck Center for Molecular Medicine (Germany) MIPS - Munich Information Centre for Protein Sequences (Germany) PZR - Bioinformatics at the Proteome Center Rostock VSNS BCD - Virtual School of Natural Sciences Biocomputing Division from the University of Bielefeld (Germany) BCC - Vienna University Department for Biocomputing; Austria EMBnet node BEN - Belgium EMBnet node CBS - Center for Biological Sequence Analysis (Technical University of Denmark) CSC BioBox - CSC; Finland EMBnet node ABC - Agricultural Biotechnology Center (Budapest / Hungary) TELETHON ITALY CMBI - Center for Molecular and Biomolecular Bioinformatics; Netherland EMBnet node BIO - Norway EMBnet node IBB - Institute of Biochemistry and Biophysics (Warsaw); Poland EMBnet node Pen - Portugal EMBnet Node Belozersky Institute - Belozersky Institute (Moscow); Russia EMBnet node MGS - Molecular Biological Server (Novosibirsk / Russia) CNB - Centro Nacional de Biotecnologia; Spain EMBnet node BMC - BioMedical Centre at Uppsala; Sweden EMBnet node KISAC - Karolinska Institute (KI) Sequence Analysis Computer LCB - Linnaeus Centre for Bioinformatics SBC - Stockholm Bioinformatics Center
USA and Canada
NCBI - National Center for Biotechnology Information ABCC - Advanced Biomedical Computing Center at the NCI ACGT - Advanced Center for Genome Technology at the University of Oklahoma BCM HGC - Baylor College of Medicine Human Genome Center BDGP - Berkeley Drosophila Genome Project BioTech - BioTech biology/chemistry educational resource and research tool Biotechnology - National Agricultural Library - Biotechnology BMERC - Biomolecular Engineering Research Center BROAD Institute CBIL - Computational Biology and Informatics Laboratory at the University of Pennsylvania CUBIC - Columbia University Bioinformatics Center IBC - Washington University Institute for Biomedical Computing JGI - Doe Joint Genome Institute NCGR - National Center for Genome Resources NIH - NIH molecular biology TIGR - The Institute for Genome Research UCLA - UCLA Bioinformatics Institute Biocomputing at Whitehead Institute for Biomedical Research CBR - Canadian Bioinformatics Resource (currently not working) CCB - Centre for Computational Biology at the Hospital for sick children
Asia
APBioNet - Asia-Pacific Bioinformatics network BIC-JNU - Bioinformatics Center of Jawaharlal Nehru University BIDD - Bioinformatics & Drug Design group ( National University / Singapore) DIC - Bioinformatics Centre at the University of Pune Japanese GenomeNet NIG - National Institute of Genetics of Japan KDRI - Kazusa DNA Research Institute CBI - Peking Center of Bioinformatics; Chinese EMBnet node MICRO-NET - Microbial Information Network of China HKBIC - Hong Kong Bioinformatics Center BRIC - Biological Research Information Center (Korea) MGRC - Malaysian Genomics Resource Centre BIC - BioInformatics center of the National University of Singapore
Australia
APBioNet - Asia-Pacific Bioinformatics network ANGIS - Australian National Genomic Information Service ANU - Australian National University Genomic Interactions group APAF - Australian Proteome Analysis Facility
Others
HUJI - Hebrew University of Jerusalem genomic and bioinformatics server Weizmann Bioinfo/BCU - Weizmann Institute of Science Bioinformatics and Biological Computing SANBI - South African BioInformatics Institute BDT - Base de Datos Tropical (Sao Paulo / Brazil) ICGEB - International Center for Genetic Engineering and Biotechnology (Trieste / Italy)
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Biotechnology and pharmaceutical companies
Pharmaceutical Research and Manufacturers of America membership list Bioportfolio - Gateways to biobusiness 1st BASE Singapore 5 Prime, Inc. Actelion Addgene Affymetrix, Inc. AgricultureB2B.com - Biotechnology WWW Resources Airmid Pharmaceuticals - privately held pharmaceutical company based in California. Amgen Antibodies online ARIAD Pharmaceuticals, Inc. Arpida AstraZeneca Pharmaceuticals Atheris Laboratories Aurora Fine Chemicals Basilea Bayer Biacore Int. AB Bio Balance, Inc. Bio-Synthesis Inc Biogen Idec BioImage BioLaboratorio Bio-Rad Laboratories, Inc. Biosci Register - The Online Biotech Buyer's Guide BioSystematica BioVisioN GmbH BTC - BioSpecifics Technology Co. Caprion, Inc. Carbosynth - offering 2500 carbohydrates and nucleosides Celera Genomics Co. Cellectis SA CST - Cell Signalling Technology Cell Tech CellZome AG Centocor, Inc. Ciphergen Biosystems, Inc. Clontech Laboratories, Inc. Cognetix, Inc. CSL - CSL, Ltd. CuraGen Co. Cytos deCODE Genetics, Inc. Destiny Pharma Ltd. DNAVision Do-Coop - Drug Development Drug Development Technology Eli Lilly Emerald BioStructures, Inc. Encysive Pharmaceuticals Entelechon GmbH Entelos, Inc. EnviroLogix, Inc. Enzon, Inc. Epidauros Biotechnologie AG EVOTEC BioSystems AG Esbatech EPI - Exelixis Pharmaceuticals, Inc. Exclusive Chemistry - design and synthesis of organic compounds Fermentas AB Fine Chemicals - Fine chemicals at Spectrum Chemicals. G Biosciences - Proteomic products Genaissance Pharmaceuticals, Inc. GENEART - DNA engineering and processing Genencor International, Inc. Genentech, Inc. Genetics Institute GeneProt, Inc - Geneva Proteomics GE Healthcare Genome Express, SA Genomic Solutions, Inc. GenWay Biotech, Inc. Genzyme Co. Geron Co. GL Biochem (Shangai) Ltd GSK - GlaxoSmithKline Helix Biopharma Co. HGS - Human Genome Sciences, Inc. Hoechst GmbH - Sanofi-Aventis group HRI - Helix Research Institute, Inc. Hybrigenics SA Hyseq, Inc. HyTest - Cardiac markers, disease reagents, hormones and toxins, human proteins, neuroscience products. Illumina, Inc. Incyte Pharmaceuticals, Inc. Integrated Genomics, Inc. International Stem Cell Corporation International Biosciences Invitrogen Johnson & Johnson Jova Solutions KuDOS Pharmaceutical Ltd LAROVA Biochemie GmbH Lee BioSolutions, Inc. LSB - Large Scale Biology Co. Lynx Therapeutics, Inc. Memorec - Medical Molecular Research Cologne GmbH Migenix Mitsui Chemicals America, Inc. MPI - Millennium Pharmaceuticals, Inc. Millipore Co. MOLOGEN GmbH MP Biomedicals - (formerly ICN Biomedicals & Qbiogene) MP Sciences Myriad Genetics, Inc. NEB - New England Biolabs, Inc. NGI - National Genetics Institute Nonlinear Dynamics Ltd Novartis Novo Nordisk Novozymes Ocimum Biosolutions - BioIT, Microarrays and contract research services Open Biosystems - part of Thermo Fisher Scientific Organic Chemistry Portal Pfizer, Inc. Pharmacopeia, Inc. Pharmingen Pharsight Co. POSEIDON PROBES - the life science researcher's newest source for fluorescent probes PrimerDesign Prionics AG Promega Co. Proteome, Inc. Proteome Factory (German version) PSL - Proteome Systems Ltd ProZyme, Inc. QIAGEN GmbH R&D Chemicals - Rare Chemicals Database Repligen Co. Research Genetics, Inc. Roche Bioscience sanofi-aventis Sequenom Industrial Genomics Serono Shire Pharmaceuticals Group plc Sigma-Aldrich Syngenta Synt:em The Gel Company The Genetics Company TopLab GmbH Transition Therapeutics Vernenium Vertex Pharmaceuticals WITA - Wittmann Institute of Technology and Analysis of Biomolecules GmbH Worthington Biochemical Co. Xenometrix GmbH Xerion Pharmaceuticals GmbH Zycos, Inc.
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Biotechnology and pharmaceutical companies

Pharmaceutical Research and Manufacturers of America membership list
Bioportfolio - Gateways to biobusiness
1st BASE Singapore
5 Prime, Inc.
Actelion
Addgene
Affymetrix, Inc.
AgricultureB2B.com - Biotechnology WWW Resources
Airmid Pharmaceuticals - privately held pharmaceutical company based in California.
Amgen
Antibodies online
ARIAD Pharmaceuticals, Inc.
Arpida
AstraZeneca Pharmaceuticals
Atheris Laboratories
Aurora Fine Chemicals
Basilea
Bayer
Biacore Int. AB
Bio Balance, Inc.
Bio-Synthesis Inc
Biogen Idec
BioImage
BioLaboratorio
Bio-Rad Laboratories, Inc.
Biosci Register - The Online Biotech Buyer's Guide
BioSystematica
BioVisioN GmbH
BTC - BioSpecifics Technology Co.
Caprion, Inc.
Carbosynth - offering 2500 carbohydrates and nucleosides
Celera Genomics Co.
Cellectis SA
CST - Cell Signalling Technology
Cell Tech
CellZome AG
Centocor, Inc.
Ciphergen Biosystems, Inc.
Clontech Laboratories, Inc.
Cognetix, Inc.
CSL - CSL, Ltd.
CuraGen Co.
Cytos
deCODE Genetics, Inc.
Destiny Pharma Ltd.
DNAVision
Do-Coop - Drug Development
Drug Development Technology
Eli Lilly
Emerald BioStructures, Inc.
Encysive Pharmaceuticals
Entelechon GmbH
Entelos, Inc.
EnviroLogix, Inc.
Enzon, Inc.
Epidauros Biotechnologie AG
EVOTEC BioSystems AG
Esbatech
EPI - Exelixis Pharmaceuticals, Inc.
Exclusive Chemistry - design and synthesis of organic compounds
Fermentas AB
Fine Chemicals - Fine chemicals at Spectrum Chemicals.
G Biosciences - Proteomic products
Genaissance Pharmaceuticals, Inc.
GENEART - DNA engineering and processing
Genencor International, Inc.
Genentech, Inc.
Genetics Institute
GeneProt, Inc - Geneva Proteomics
GE Healthcare
Genome Express, SA
Genomic Solutions, Inc.
GenWay Biotech, Inc.
Genzyme Co.
Geron Co.
GL Biochem (Shangai) Ltd
GSK - GlaxoSmithKline
Helix Biopharma Co.
HGS - Human Genome Sciences, Inc.
Hoechst GmbH - Sanofi-Aventis group
HRI - Helix Research Institute, Inc.
Hybrigenics SA
Hyseq, Inc.
HyTest - Cardiac markers, disease reagents, hormones and toxins, human proteins, neuroscience products.
Illumina, Inc.
Incyte Pharmaceuticals, Inc.
Integrated Genomics, Inc.
International Stem Cell Corporation
International Biosciences
Invitrogen
Johnson & Johnson
Jova Solutions
KuDOS Pharmaceutical Ltd
LAROVA Biochemie GmbH
Lee BioSolutions, Inc.
LSB - Large Scale Biology Co.
Lynx Therapeutics, Inc.
Memorec - Medical Molecular Research Cologne GmbH
Migenix
Mitsui Chemicals America, Inc.
MPI - Millennium Pharmaceuticals, Inc.
Millipore Co.
MOLOGEN GmbH
MP Biomedicals - (formerly ICN Biomedicals & Qbiogene)
MP Sciences
Myriad Genetics, Inc.
NEB - New England Biolabs, Inc.
NGI - National Genetics Institute
Nonlinear Dynamics Ltd
Novartis
Novo Nordisk
Novozymes
Ocimum Biosolutions - BioIT, Microarrays and contract research services
Open Biosystems - part of Thermo Fisher Scientific
Organic Chemistry Portal
Pfizer, Inc.
Pharmacopeia, Inc.
Pharmingen
Pharsight Co.
POSEIDON PROBES - the life science researcher's newest source for fluorescent probes
PrimerDesign
Prionics AG
Promega Co.
Proteome, Inc.
Proteome Factory (German version)
PSL - Proteome Systems Ltd
ProZyme, Inc.
QIAGEN GmbH
R&D Chemicals - Rare Chemicals Database
Repligen Co.
Research Genetics, Inc.
Roche Bioscience
sanofi-aventis
Sequenom Industrial Genomics
Serono
Shire Pharmaceuticals Group plc
Sigma-Aldrich
Syngenta
Synt:em
The Gel Company
The Genetics Company
TopLab GmbH
Transition Therapeutics
Vernenium
Vertex Pharmaceuticals
WITA - Wittmann Institute of Technology and Analysis of Biomolecules GmbH
Worthington Biochemical Co.
Xenometrix GmbH
Xerion Pharmaceuticals GmbH
Zycos, Inc.

Bioinformatics companies
Aborygen Accelrys, Inc ACD - Advanced Chemistry Development, Inc. Acrendo Medical Office Softwware - highly customizable Electronic Medical Record (EMR) software AlgoNomics NV ApoCom, Inc. Base4 Bioinformatics BIOBASE - Biologische Datenbanken GmbH Biodatabases.com - Biological databases division of Amita Corp. BioDiscovery, Inc. Biomedical Computing, Inc. BIOSIS BIOSOFT BioTools, Inc. Caesar Software LLC CLC bio - Provider of bioinformatics consulting, software and hardware Cognia Corporation, Inc. Compugen [USA \| Israel] Computational Genetics Laboratory - Multifactor Dimensionality Reduction (MDR) open source software LIMS By Core Informatics - software company focused on delivering fully customized web-based Laboratory Information Management Systems (LIMS) DNA* - DNAStar DoubleTwist, Inc. (formerly Pangea Systems) DYNACOM Co., Ltd. - Customized and packaged software solutions EMR Software Experts, Inc. EraGen Biosciences FQS - FQS Poland Sp. z.o.o. Genamics GeneBio - Geneva Bioinformatics SA Gene Codes Co GeneData AG Geneformatics, Inc. Gene Logic, Inc. Genesifter - Web-based microarray analysis tool (Free trial accounts available) GENETYX - Software Development Co, GENETYX software Genologics Genome Quest Genomics Solutions, Inc GenoMining, SA Geospiza, Inc. GNS - Gene Network Sciences Golden Helix InforMax, Inc. InGenuity Systems, Inc. Inpharmatica IT.OMICS Janssen-genomics KineMatik Lambda-Plus SA LION Bioscience AG Matrix Science Ltd MDL - MDL Information Systems, Inc. MediGenomix GmbH Metaphorics LLC Microrite Neomorphic Software, Inc. Paracel, Inc. Partek, Inc. - Pattern Analysis and Recognition Technologies PREMIER Biosoft International Progeny Software, LLC Proteome Consult - Consulting & Project Management for Protein Analysis & Proteomics Redasoft Rishi Biotech Bio-IT company offering bioinformatics solutions to the Pharma, Healthcare and Biotech industries Rosetta Biosoftware - Informatics solutions for life sciences research Sagitus Solutions ScienceFactory GmbH Scitech SGI - Silicon Graphics, Chemistry and Biological Sciences Spotfire, Inc. SBI - Structur

Bioinformatics companies

Aborygen
Accelrys, Inc
ACD - Advanced Chemistry Development, Inc.
Acrendo Medical Office Softwware - highly customizable Electronic Medical Record (EMR) software
AlgoNomics NV
ApoCom, Inc.
Base4 Bioinformatics
BIOBASE - Biologische Datenbanken GmbH
Biodatabases.com - Biological databases division of Amita Corp.
BioDiscovery, Inc.
Biomedical Computing, Inc.
BIOSIS
BIOSOFT
BioTools, Inc.
Caesar Software LLC
CLC bio - Provider of bioinformatics consulting, software and hardware
Cognia Corporation, Inc.
Compugen [USA | Israel]
Computational Genetics Laboratory - Multifactor Dimensionality Reduction (MDR) open source software
LIMS By Core Informatics - software company focused on delivering fully customized web-based Laboratory Information Management Systems (LIMS)
DNA* - DNAStar
DoubleTwist, Inc. (formerly Pangea Systems)
DYNACOM Co., Ltd. - Customized and packaged software solutions
EMR Software Experts, Inc.
EraGen Biosciences
FQS - FQS Poland Sp. z.o.o.
Genamics
GeneBio - Geneva Bioinformatics SA
Gene Codes Co
GeneData AG
Geneformatics, Inc.
Gene Logic, Inc.
Genesifter - Web-based microarray analysis tool (Free trial accounts available)
GENETYX - Software Development Co, GENETYX software
Genologics
Genome Quest
Genomics Solutions, Inc
GenoMining, SA
Geospiza, Inc.
GNS - Gene Network Sciences
Golden Helix
InforMax, Inc.
InGenuity Systems, Inc.
Inpharmatica
IT.OMICS
Janssen-genomics
KineMatik
Lambda-Plus SA
LION Bioscience AG
Matrix Science Ltd
MDL - MDL Information Systems, Inc.
MediGenomix GmbH
Metaphorics LLC
Microrite
Neomorphic Software, Inc.
Paracel, Inc.
Partek, Inc. - Pattern Analysis and Recognition Technologies
PREMIER Biosoft International
Progeny Software, LLC
Proteome Consult - Consulting & Project Management for Protein Analysis & Proteomics
Redasoft
Rishi Biotech Bio-IT company offering bioinformatics solutions to the Pharma, Healthcare and Biotech industries
Rosetta Biosoftware - Informatics solutions for life sciences research
Sagitus Solutions
ScienceFactory GmbH
Scitech
SGI - Silicon Graphics, Chemistry and Biological Sciences
Spotfire, Inc.
SBI - Structur